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Last updated: 2022/11/18

Search Assembled RNA-Seq

next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1 A_BomoFB_comp0_c0_seq1
292bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_protein_tiptop-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0010468 P regulation of gene expression
GO:0046872 F metal ion binding
GO:0048730 P epidermis morphogenesis
GO:0048749 P compound eye development
GO:0061330 P Malpighian tubule stellate cell differentiation
FPKM:1.47 TPM:1.61
2 A_BomoFB_comp0_c1_seq1
201bp
 teashirt-like_protein_[Danaus_plexippus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0010468 P regulation of gene expression
GO:0046872 F metal ion binding
GO:0048730 P epidermis morphogenesis
GO:0048749 P compound eye development
GO:0061330 P Malpighian tubule stellate cell differentiation
FPKM:3.56 TPM:3.90
3 A_BomoFB_comp100003_c0_seq1
334bp
FPKM:2.15 TPM:2.35
4 A_BomoFB_comp10000_c0_seq1
1540bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_translational_activator_GCN1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
FPKM:12.12 TPM:13.28
5 A_BomoFB_comp10001_c0_seq1
946bp
FPKM:6.55 TPM:7.18
6 A_BomoFB_comp10001_c0_seq2
225bp
 hypothetical_protein_[Nostoc_sp._PCC_7120]
FPKM:1.10 TPM:1.21
7 A_BomoFB_comp10001_c0_seq3
1473bp
FPKM:2.39 TPM:2.62
8 A_BomoFB_comp10002_c0_seq1
1407bp
 hypothetical_protein_RR48_11632,_partial_[Papilio_machaon]
FPKM:5.72 TPM:6.27
9 A_BomoFB_comp10002_c0_seq2
357bp
 drug_transporter_[Moniliophthora_roreri_MCA_2997]
FPKM:18.99 TPM:20.81
10 A_BomoFB_comp10002_c0_seq3
1868bp
 hypothetical_protein_RR48_11632,_partial_[Papilio_machaon]
FPKM:2.71 TPM:2.97
11 A_BomoFB_comp10003_c0_seq1
290bp
 PREDICTED:_protein_TEX261_[Papilio_polytes]
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0030173 C integral component of Golgi membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0097020 F COPII receptor activity
FPKM:2.50 TPM:2.74
12 A_BomoFB_comp10003_c0_seq2
1251bp
FPKM:4.12 TPM:4.51
13 A_BomoFB_comp10003_c0_seq3
713bp
 PREDICTED:_protein_TEX261_[Amyelois_transitella]
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0030173 C integral component of Golgi membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0043065 P positive regulation of apoptotic process
GO:0097020 F COPII receptor activity
FPKM:3.28 TPM:3.59
14 A_BomoFB_comp10003_c0_seq4
286bp
FPKM:2.59 TPM:2.84
15 A_BomoFB_comp10003_c0_seq5
318bp
FPKM:0.80 TPM:0.88
16 A_BomoFB_comp100042_c0_seq1
340bp
FPKM:6.20 TPM:6.80
17 A_BomoFB_comp10004_c0_seq1
1497bp
 LOW_QUALITY_PROTEIN:_hypothetical_protein_M514_20815_[Trichuris_suis]
FPKM:1.82 TPM:1.99
18 A_BomoFB_comp1000502_c0_seq1
229bp
 hypothetical_protein_XE03_1666_[candidate_division_TA06_bacterium_34_109]
FPKM:1.03 TPM:1.13
19 A_BomoFB_comp10005_c0_seq1
2413bp
 PREDICTED:_serine/threonine-protein_kinase_tousled-like_2_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005882 C intermediate filament
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0035556 P intracellular signal transduction
GO:0048471 C perinuclear region of cytoplasm
GO:0071480 P cellular response to gamma radiation
FPKM:3.44 TPM:3.77
20 A_BomoFB_comp10005_c0_seq2
218bp
 putative_mixed_lineage_protein_kinase_[Danaus_plexippus]
FPKM:2.50 TPM:2.74
21 A_BomoFB_comp10005_c0_seq3
2416bp
 PREDICTED:_serine/threonine-protein_kinase_tousled-like_2_isoform_X11_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006468 P protein phosphorylation
GO:0006886 P intracellular protein transport
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
FPKM:1.80 TPM:1.97
22 A_BomoFB_comp10005_c0_seq4
2601bp
 PREDICTED:_serine/threonine-protein_kinase_tousled-like_2_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005882 C intermediate filament
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0035556 P intracellular signal transduction
GO:0048471 C perinuclear region of cytoplasm
GO:0071480 P cellular response to gamma radiation
FPKM:3.27 TPM:3.58
23 A_BomoFB_comp10005_c0_seq5
336bp
 PREDICTED:_serine/threonine-protein_kinase_tousled-like_2_isoform_X5_[Bombyx_mori]
FPKM:0.94 TPM:1.03
24 A_BomoFB_comp10005_c0_seq6
524bp
 PREDICTED:_serine/threonine-protein_kinase_tousled-like_2_isoform_X4_[Bombyx_mori]
FPKM:0.27 TPM:0.29
25 A_BomoFB_comp10006_c0_seq1
1507bp
 PREDICTED:_tolloid-like_protein_1_[Bombyx_mori]
FPKM:0.30 TPM:0.33
26 A_BomoFB_comp10006_c0_seq2
1963bp
 PREDICTED:_tolloid-like_protein_1_[Bombyx_mori]
FPKM:1.39 TPM:1.52
27 A_BomoFB_comp10006_c0_seq3
4496bp
 PREDICTED:_tolloid-like_protein_1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
FPKM:20.31 TPM:22.25
28 A_BomoFB_comp10007_c0_seq1
1841bp
 PREDICTED:_uncharacterized_protein_LOC106720006_isoform_X2_[Papilio_machaon]
FPKM:1.36 TPM:1.50
29 A_BomoFB_comp10007_c0_seq2
4298bp
 PREDICTED:_junctophilin-1_isoform_X1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016529 C sarcoplasmic reticulum
GO:0033017 C sarcoplasmic reticulum membrane
FPKM:5.15 TPM:5.64
30 A_BomoFB_comp10008_c0_seq1
4294bp
 MLE_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000785 C chromatin
GO:0000805 C X chromosome
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0007549 P dosage compensation
GO:0008026 F helicase activity
GO:0008340 P determination of adult lifespan
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016456 C X chromosome located dosage compensation complex, transcription activating
GO:0016457 P dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787 F hydrolase activity
GO:0031453 P positive regulation of heterochromatin assembly
GO:0044822 F RNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048675 P axon extension
GO:0072487 C MSL complex
FPKM:0.00 TPM:0.00
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