SilkBase
Last updated: 2022/11/18
Bombyx_mori
BLAST
Parameter
Command
Program
blastn
tblastn
tblastx
blastx
blastp
Database
Gene models (based on the new assembled genome)
Old gene sets
The complete sequences of the FL-cDNA clones
cDNA
Assembled RNA-seq
ORF from Assembled RNA-seq (blastx or blastp)
SAGE/MPSS
transposon
Assembled genome
Old scaffold (2008)
Fosmid clone
BAC clone
Hypothetically reconstructed genomes of 18 Bombyx mori strains
18 Re-sequenced Genome DNA libraries (Partial RAW Reads)
cDNA
Expect
1e-100
1e-50
1e-30
1e-10
1e-9
1e-5
0.0001
0.001
0.01
0.1
1
10
100
1000
Sequence String
(FASTA Format)
Sequence File
(FASTA Format)
Sub Sequence
(Location)
From
To
Matrix
BLOSUM62
BLOSUM45
BLOSUM80
PAM30
PAM70
Filter
ON
OFF
Ungapped Alignment
ON
OFF
Database Genetic Codes
(tblast[nx] only)
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Alignment View
Pairwise
master-slave with identities
master-slave without identities
flat master-slave with identities
flat master-slave without identities
BLAST XML
Hit Table
Descriptions
100
1000
50000
100000
Alignments
50
100
1000
50000
100000
1000000
Other Advanced options
Command
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Bombyx mori
BLAST
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Information
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