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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
31 A_BomoFB_comp10008_c0_seq2
3698bp
 MLE_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000785 C chromatin
GO:0000805 C X chromosome
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0007549 P dosage compensation
GO:0008026 F helicase activity
GO:0008340 P determination of adult lifespan
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016456 C X chromosome located dosage compensation complex, transcription activating
GO:0016457 P dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787 F hydrolase activity
GO:0031453 P positive regulation of heterochromatin assembly
GO:0044822 F RNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048675 P axon extension
GO:0072487 C MSL complex
FPKM:1.38 TPM:1.51
32 A_BomoFB_comp10008_c0_seq3
2751bp
 MLE_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000785 C chromatin
GO:0000805 C X chromosome
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0007549 P dosage compensation
GO:0008026 F helicase activity
GO:0008340 P determination of adult lifespan
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016456 C X chromosome located dosage compensation complex, transcription activating
GO:0016457 P dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787 F hydrolase activity
GO:0031453 P positive regulation of heterochromatin assembly
GO:0044822 F RNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048675 P axon extension
GO:0072487 C MSL complex
FPKM:0.00 TPM:0.00
33 A_BomoFB_comp10008_c0_seq4
2733bp
 MLE_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000785 C chromatin
GO:0000805 C X chromosome
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0007549 P dosage compensation
GO:0008026 F helicase activity
GO:0008340 P determination of adult lifespan
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016456 C X chromosome located dosage compensation complex, transcription activating
GO:0016457 P dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787 F hydrolase activity
GO:0031453 P positive regulation of heterochromatin assembly
GO:0044822 F RNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048675 P axon extension
GO:0072487 C MSL complex
FPKM:0.00 TPM:0.00
34 A_BomoFB_comp10008_c0_seq5
3716bp
 MLE_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000785 C chromatin
GO:0000805 C X chromosome
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0007549 P dosage compensation
GO:0008026 F helicase activity
GO:0008340 P determination of adult lifespan
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016456 C X chromosome located dosage compensation complex, transcription activating
GO:0016457 P dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787 F hydrolase activity
GO:0031453 P positive regulation of heterochromatin assembly
GO:0044822 F RNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048675 P axon extension
GO:0072487 C MSL complex
FPKM:0.00 TPM:0.00
35 A_BomoFB_comp10008_c0_seq6
4276bp
 MLE_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000785 C chromatin
GO:0000805 C X chromosome
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0007549 P dosage compensation
GO:0008026 F helicase activity
GO:0008340 P determination of adult lifespan
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016456 C X chromosome located dosage compensation complex, transcription activating
GO:0016457 P dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787 F hydrolase activity
GO:0031453 P positive regulation of heterochromatin assembly
GO:0044822 F RNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048675 P axon extension
GO:0072487 C MSL complex
FPKM:5.62 TPM:6.16
36 A_BomoFB_comp10009_c0_seq1
1893bp
 PREDICTED:_hyccin_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0042552 P myelination
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0090002 P protein localization to plasma membrane
FPKM:12.26 TPM:13.43
37 A_BomoFB_comp10009_c0_seq2
1374bp
 PREDICTED:_hyccin_isoform_X1_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0042552 P myelination
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0090002 P protein localization to plasma membrane
FPKM:0.22 TPM:0.25
38 A_BomoFB_comp1000_c0_seq1
310bp
hypothetical_protein_Csp_D29540_[Curvibacter_putative_symbiont_of_Hydra_magnipapillata]
FPKM:1.27 TPM:1.39
39 A_BomoFB_comp10010_c0_seq1
1611bp
 PREDICTED:_uncharacterized_protein_LOC101747151_isoform_X1_[Bombyx_mori]
FPKM:4.83 TPM:5.29
40 A_BomoFB_comp10010_c0_seq2
221bp
 PREDICTED:_uncharacterized_protein_LOC101735359_isoform_X3_[Bombyx_mori]
FPKM:4.73 TPM:5.18
41 A_BomoFB_comp100113_c0_seq1
734bp
 Lix1_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0097352 P autophagosome maturation
FPKM:3.94 TPM:4.32
42 A_BomoFB_comp10011_c0_seq1
3829bp
 PREDICTED:_proteasome_activator_complex_subunit_4-like_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
FPKM:12.68 TPM:13.89
43 A_BomoFB_comp10011_c0_seq2
873bp
 PREDICTED:_proteasome_activator_complex_subunit_4-like_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
FPKM:0.22 TPM:0.24
44 A_BomoFB_comp10011_c0_seq3
218bp
 PREDICTED:_proteasome_activator_complex_subunit_4-like_isoform_X3_[Papilio_machaon]
FPKM:3.74 TPM:4.10
45 A_BomoFB_comp100129_c0_seq1
2413bp
 ATP-binding_cassette_sub-family_B_member_3_[Trichoplusia_ni]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005919 C pleated septate junction
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0008152 P metabolic process
GO:0008559 F ABC-type xenobiotic transporter activity
GO:0015562 F efflux transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031427 P response to methotrexate
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042908 P xenobiotic transport
GO:0043190 C ATP-binding cassette (ABC) transporter complex
GO:0055085 P transmembrane transport
GO:0060857 P establishment of glial blood-brain barrier
FPKM:2.51 TPM:2.75
46 A_BomoFB_comp10012_c0_seq1
833bp
 PREDICTED:_TBP-associated_factor_13_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
FPKM:1.67 TPM:1.83
47 A_BomoFB_comp10012_c0_seq2
725bp
 TBP-associated_factor_13_isoform_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
FPKM:0.90 TPM:0.98
48 A_BomoFB_comp10012_c0_seq3
682bp
 TBP-associated_factor_13_isoform_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
FPKM:3.56 TPM:3.90
49 A_BomoFB_comp10012_c0_seq4
746bp
 TBP-associated_factor_13_isoform_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
FPKM:0.00 TPM:0.00
50 A_BomoFB_comp10012_c0_seq5
661bp
 TBP-associated_factor_13_isoform_2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
FPKM:8.52 TPM:9.34
51 A_BomoFB_comp10012_c0_seq6
897bp
 PREDICTED:_TBP-associated_factor_13_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
FPKM:0.63 TPM:0.69
52 A_BomoFB_comp100138_c0_seq1
1397bp
 PREDICTED:_U3_small_nucleolar_RNA-associated_protein_18_homolog_[Papilio_xuthus]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0007275 P multicellular organism development
GO:0007405 P neuroblast proliferation
GO:0022008 P neurogenesis
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0042585 C germinal vesicle
GO:0048132 P female germ-line stem cell asymmetric division
FPKM:3.22 TPM:3.53
53 A_BomoFB_comp10013_c0_seq1
824bp
 gag-like_protein_[Bombyx_mori]
FPKM:8.91 TPM:9.76
54 A_BomoFB_comp100142_c0_seq1
367bp
FPKM:7.36 TPM:8.07
55 A_BomoFB_comp100149_c0_seq1
3050bp
 PREDICTED:_histone-lysine_N-methyltransferase_trithorax-like_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
FPKM:3.14 TPM:3.44
56 A_BomoFB_comp10014_c0_seq1
1649bp
 PREDICTED:_glycosylated_lysosomal_membrane_protein_A-like_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.43 TPM:2.66
57 A_BomoFB_comp10014_c0_seq2
2654bp
 PREDICTED:_glycosylated_lysosomal_membrane_protein_A-like_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.00 TPM:0.00
58 A_BomoFB_comp10014_c0_seq3
2596bp
 PREDICTED:_glycosylated_lysosomal_membrane_protein_A-like_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.32 TPM:0.35
59 A_BomoFB_comp10014_c0_seq4
2625bp
 PREDICTED:_glycosylated_lysosomal_membrane_protein_A-like_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:6.90 TPM:7.56
60 A_BomoFB_comp100150_c0_seq1
791bp
 PREDICTED:_transmembrane_protein_170A_[Amyelois_transitella]
GO:0005635 C nuclear envelope
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0071786 P endoplasmic reticulum tubular network organization
FPKM:3.30 TPM:3.62
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