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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1 O_BomoASG10000_complete:A_BomoASG_c25993_g1_i6
1188bp
 pyruvate_carboxylase,_mitochondrial_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0004075 F biotin carboxylase activity
GO:0004736 F pyruvate carboxylase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006090 P pyruvate metabolic process
GO:0006094 P gluconeogenesis
GO:0006107 P oxaloacetate metabolic process
GO:0006629 P lipid metabolic process
GO:0006768 P biotin metabolic process
GO:0008152 P metabolic process
GO:0009374 F biotin binding
GO:0010629 P negative regulation of gene expression
GO:0016874 F ligase activity
GO:0019074 P viral RNA genome packaging
GO:0031406 F carboxylic acid binding
GO:0044791 P obsolete positive regulation by host of viral release from host cell
GO:0044794 P positive regulation by host of viral process
GO:0046872 F metal ion binding
2 O_BomoASG10001_complete:A_BomoASG_c25993_g1_i6
196bp
 Uncharacterised_protein_[Mycobacterium_abscessus_subsp._abscessus]
3 O_BomoASG10002_internal:A_BomoASG_c25994_g1_i1
161bp
 guanine_nucleotide_exchange_factor_subunit_Rich_[Helicoverpa_armigera]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0032588 C trans-Golgi network membrane
GO:0034066 C Ric1-Rgp1 guanyl-nucleotide exchange factor complex
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:1903363 P negative regulation of cellular protein catabolic process
4 O_BomoASG10003_complete:A_BomoASG_c26000_g1_i1
503bp
 probable_ATP-dependent_RNA_helicase_DDX52_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
5 O_BomoASG10004_complete:A_BomoASG_c26000_g1_i1
141bp
6 O_BomoASG10005_complete:A_BomoASG_c26000_g1_i2
610bp
 probable_ATP-dependent_RNA_helicase_DDX52_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
7 O_BomoASG10006_complete:A_BomoASG_c26000_g1_i2
141bp
8 O_BomoASG10007_complete:A_BomoASG_c26000_g1_i2
101bp
9 O_BomoASG10008_internal:A_BomoASG_c26002_g1_i1
203bp
 crossover_junction_endonuclease_MUS81_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10 O_BomoASG10009_5prime_partial:A_BomoASG_c26004_g1_i1
257bp
 uncharacterized_protein_LOC101746411_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0047936 F glucose 1-dehydrogenase [NAD(P)] activity
GO:0055114 P obsolete oxidation-reduction process
11 O_BomoASG1000_complete:A_BomoASG_c6354_g1_i2
223bp
 uncharacterized_protein_LOC101743364_isoform_X1_[Bombyx_mori]
12 O_BomoASG10010_3prime_partial:A_BomoASG_c26005_g1_i1
427bp
 phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_A_isoform_X1_[Bombyx_mori]
GO:0000506 C glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0008194 F UDP-glycosyltransferase activity
GO:0009893 P positive regulation of metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016254 P preassembly of GPI anchor in ER membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0017176 F phosphatidylinositol N-acetylglucosaminyltransferase activity
13 O_BomoASG10011_5prime_partial:A_BomoASG_c26007_g1_i2
678bp
 cleavage_and_polyadenylation_specificity_factor_subunit_CG7185_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005849 C mRNA cleavage factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
14 O_BomoASG10012_complete:A_BomoASG_c26007_g1_i2
216bp
15 O_BomoASG10013_complete:A_BomoASG_c26007_g1_i2
178bp
16 O_BomoASG10014_5prime_partial:A_BomoASG_c26007_g1_i3
106bp
 cleavage_and_polyadenylation_specificity_factor_subunit_CG7185_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005849 C mRNA cleavage factor complex
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
17 O_BomoASG10015_complete:A_BomoASG_c26007_g1_i4
438bp
 cleavage_and_polyadenylation_specificity_factor_subunit_CG7185_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005849 C mRNA cleavage factor complex
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
18 O_BomoASG10016_complete:A_BomoASG_c26007_g1_i4
229bp
19 O_BomoASG10017_complete:A_BomoASG_c26007_g1_i4
162bp
20 O_BomoASG10018_5prime_partial:A_BomoASG_c26007_g1_i5
662bp
 cleavage_and_polyadenylation_specificity_factor_subunit_CG7185_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005849 C mRNA cleavage factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
21 O_BomoASG10019_complete:A_BomoASG_c26007_g1_i5
216bp
22 O_BomoASG1001_5prime_partial:A_BomoASG_c6360_g1_i1
202bp
 vinculin-like_[Helicoverpa_armigera]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005925 C focal adhesion
GO:0006909 P phagocytosis
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0048812 P neuron projection morphogenesis
GO:0051015 F actin filament binding
23 O_BomoASG10020_complete:A_BomoASG_c26007_g1_i5
162bp
24 O_BomoASG10021_5prime_partial:A_BomoASG_c26007_g1_i6
657bp
 cleavage_and_polyadenylation_specificity_factor_subunit_CG7185_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005849 C mRNA cleavage factor complex
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
25 O_BomoASG10022_complete:A_BomoASG_c26007_g1_i6
211bp
26 O_BomoASG10023_complete:A_BomoASG_c26007_g1_i6
162bp
27 O_BomoASG10024_3prime_partial:A_BomoASG_c26008_g1_i1
622bp
 uncharacterized_protein_LOC101739846_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005840 C ribosome
GO:0006457 P protein folding
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
28 O_BomoASG10025_5prime_partial:A_BomoASG_c26008_g1_i1
100bp
29 O_BomoASG10026_3prime_partial:A_BomoASG_c26008_g1_i2
606bp
 uncharacterized_protein_LOC101739846_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
30 O_BomoASG10027_5prime_partial:A_BomoASG_c26008_g1_i2
100bp
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