SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Download

Bombyx mori

If you use the genome assembly and the gene models in your research, please cite our paper:
Munetaka Kawamoto, Akiya Jouraku, Atsushi Toyoda, Kakeru Yokoi, Yohei Minakuchi, Susumu Katsuma, Asao Fujiyama, Takashi Kiuchi, Kimiko Yamamoto, and Toru Shimada. High-Quality Genome Assembly of the Silkworm, Bombyx mori. Insect Biochemistry and Molecular Biology, 2019,107:53-62.
Name Description File File inrofmation
Genome assembly (Nov.2016)Bomo_Chr : Chromosome number was determined. Scaffolds were connected with N.
Bomo_Scaf : Chromosome number was not determined.
p50T strain, Male genome.
Sequencing was performed on the PacBio RS II and the Illumina HiSeq 2500.		DOWNLOADMulti fasta format, gz file, 140.5MB
MD5 = 6f059f076aabb296b3458ebf3a5af8ce
Gene models (Jan.2017)Nucleotide sequences.
Gene models based on the genome assembly (Nov.2016)		DOWNLOADMulti fasta format, gz file, 7.5MB
MD5 = e29e863a3bcf55f87a5385eb84165594
Protein sequences.
Gene models based on the genome assembly (Nov.2016)		DOWNLOADMulti fasta format, gz file, 4.8MB
MD5 = 2e52a6defbbd069ec771570f32713992
GFF3 File.
Gene models based on the genome assembly (Nov.2016)		DOWNLOADGFF3 format, gz file, 4.8MB
MD5 = b99b6ac6360b9a9df7d9b67f6c88d423
De novo assembly of RNA-seqA_BomoASG: Anterior silk gland (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 11.1MB
MD5 = 43cd9ccb8b23820705badadc4798074e
A_BomoBR: Brain (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 37.9MB
MD5 = f84d2621652bd8e1a9c6852e06f64246
A_BomoEE: Early embryo (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 40.7MB
MD5 = 3ff64b0e19e1cb6a3b0e9dc58b40f3bc
A_BomoFB: Fat body (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 8.1MB
MD5 = 5fba52facd147f7d0e90d1126e74fbb4
A_BomoIG: Internal genitalia (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 36.2MB
MD5 = 15c2f0cfd2c573bf906ec55c464e5f28
A_BomoMG: Midgut (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 9.2MB
MD5 = b4d1a22133699227631161df75f5829f
A_BomoMSG: Middle silk gland (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 8.6MB
MD5 = f9fd4ce3009c3fc82592237a4b1031d4
A_BomoN4EE: Early embryo (N4 strain) (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 28.8MB
MD5 = e891d64ce7e1a688598aa5ff1700a0f7
A_BomoOtmSK: Epidermis (Otm strain) (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 12.0MB
MD5 = 88c32cca2fb5617a4287d4fcc2bdf080
A_BomoSK: Epidermis (Details)
Nucleotide sequences.		DOWNLOADMulti fasta format, gz file, 12.2MB
MD5 = a3c0f3f63f93ad1dd369ea1e6208c78e
ORF from de novo assembly of RNA-seqO_BomoASG: Anterior silk gland (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 3.6MB
MD5 = 30bc8b5c05c835825ded033853995b27
O_BomoBR: Brain (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 6.2MB
MD5 = 42fb8e1c513aba5e7b6c983574215ea3
O_BomoEE: Early embryo (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 6.0MB
MD5 = 8059e72d8ac82de8deba9a62dddeef4c
O_BomoFB: Fat body (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 3.2MB
MD5 = 08de0d4b1541b7adcb51ee2f4c515592
O_BomoIG: Internal genitalia (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 6.2MB
MD5 = 9c22c2874818adf68fce3deb5f993f95
O_BomoMG: Midgut (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 2.6MB
MD5 = b1cd6e5c2bf052f97f4fae09414c6225
O_BomoMSG: Middle silk gland (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 3.1MB
MD5 = 77522612ccd2e3524ba18267265f5e43
O_BomoN4EE: Early embryo (N4 strain) (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 5.2MB
MD5 = 0639aaff0234754a138ede4071ffc32e
O_BomoOtmSK: Epidermis (Otm strain) (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 4.0MB
MD5 = 6f16f4b0c764f9cf7ea89d8a9a6e5f9b
O_BomoSK: Epidermis (Details)
Amino acid sequences.		DOWNLOADMulti fasta format, gz file, 3.9MB
MD5 = 0796259dd0f84900ff0e7fc76af978a8
Back to top

Raw data deposition

Category Library name sra-submission sra-run DDBJ/EMBL/GenBank assembly accession
RNA-seqBomoASGDRA007064DRR142720-
BomoBRDRA006778DRR128833, DRR128834-
BomoEEDRA001104DRR013821, DRR013822, DRR013823, DRR013824, DRR013825, DRR013826, DRR013827, DRR013828-
BomoFBDRA005299DRR077427-
BomoIGDRA006778DRR128835, DRR128836-
BomoMGDRA007063DRR142719-
BomoMSGDRA007064DRR142721-
BomoN4EEDRA001338DRR015667, DRR015668-
BomoOtmSKDRA005299DRR077428-
BomoSKDRA005299DRR077426-
piRNA-seqOVDRA000173DRR000433-
TEDRA000173DRR000434-
MWDRA000173DRR000436-
WFDRA000173DRR000437-
LYDRA000173DRR000435-
Siwi--AHAAC0000001-AHAAC1704525
BmAgo3--AHAAD0000001-AHAAD2196220
GFP #8DRA000374DRR000974, DRR000975, DRR000976-
0h EggDRA000317DRR000787-
6h EggDRA000317DRR000788-
12h EggDRA000317DRR000789-
24h EggDRA000317DRR000790-
40h Diapause EggDRA000317DRR000791-
ChIP-seqInputDRA000527DRR001871-
pIZDRA002247DRR018650-
BmHP1aDRA002247DRR018647-
Cdp1DRA000963DRR006762-
IgG-RDRA000527DRR001873-
H3K4me1DRA000527DRR018646-
H3K4me2DRA000527DRR001874-
H3K4me3DRA000527DRR001872-
H3K9acDRA000527DRR001875-
H3K9me2DRA000527DRR001877-
H3K9me3DRA000527DRR001878-
H3K27acDRA002247DRR018643-
H3K27me3DRA002247DRR018644-
H3K36me3DRA002247DRR018645-
IgG-MDRA000527DRR001876-
Pol2DRA000527DRR001879-
BACW-BAC_BABU--BABU01000001-BABU01000479
Re-sequenced GenomeC108TDRA004652DRR059711-
N4DRA004652DRR059712-
b20DRA004652DRR059699-
c10DRA004652DRR059693-
c51DRA004652DRR059707-
d18DRA004652DRR059700-
e10DRA004652DRR059705-
f35DRA004652DRR059698-
g53DRA004652DRR059708-
k25DRA004652DRR059697-
n16DRA004652DRR059702-
o55DRA004652DRR059703-
o56DRA004652DRR059704-
p20DRA004652DRR059696-
p21DRA004652DRR059694-
p22DRA004652DRR059695-
p44DRA004652DRR059706-
u48DRA004652DRR059701-
Bombyx mandarina, SakadoDRA004652DRR059710-
Bombyx mandarina, OkiDRA004652DRR059709-
Back to top

- SilkBase 1999-2023 -