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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1021 A_BomoSK_comp10499_c0_seq3
2345bp
 PREDICTED:_myotubularin-related_protein_6_[Bombyx_mori]
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0010506 P regulation of autophagy
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
FPKM:5.07 TPM:5.10
1022 A_BomoSK_comp1049_c0_seq1
284bp
 hypothetical_protein_[Acidiphilium_angustum]
FPKM:1.14 TPM:1.15
1023 A_BomoSK_comp10500_c0_seq1
2732bp
 PREDICTED:_polycomb_protein_Pcl_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007379 P segment specification
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0019827 P stem cell population maintenance
GO:0035064 F methylated histone binding
GO:0035098 C ESC/E(Z) complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048863 P stem cell differentiation
GO:0061086 P negative regulation of histone H3-K27 methylation
GO:0061087 P positive regulation of histone H3-K27 methylation
FPKM:4.24 TPM:4.26
1024 A_BomoSK_comp10500_c1_seq1
559bp
 PREDICTED:_uncharacterized_protein_LOC106710398_isoform_X1_[Papilio_machaon]
FPKM:2.43 TPM:2.44
1025 A_BomoSK_comp105011_c0_seq1
915bp
FPKM:3.87 TPM:3.89
1026 A_BomoSK_comp10501_c0_seq1
441bp
FPKM:1.56 TPM:1.57
1027 A_BomoSK_comp10502_c0_seq1
1353bp
 PREDICTED:_cytochrome_c_oxidase_assembly_protein_COX15_homolog_isoform_X1_[Bombyx_mori]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006784 P heme A biosynthetic process
GO:0008535 P respiratory chain complex IV assembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0016653 F oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor
GO:0031966 C mitochondrial membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070069 C cytochrome complex
GO:1902600 P proton transmembrane transport
FPKM:5.70 TPM:5.73
1028 A_BomoSK_comp10502_c0_seq2
1483bp
 PREDICTED:_cytochrome_c_oxidase_assembly_protein_COX15_homolog_isoform_X1_[Bombyx_mori]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006784 P heme A biosynthetic process
GO:0008535 P respiratory chain complex IV assembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0016653 F oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor
GO:0031966 C mitochondrial membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070069 C cytochrome complex
GO:1902600 P proton transmembrane transport
FPKM:1.60 TPM:1.61
1029 A_BomoSK_comp10503_c0_seq1
1104bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.00 TPM:0.00
1030 A_BomoSK_comp10503_c0_seq2
756bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:15.70 TPM:15.79
1031 A_BomoSK_comp10503_c0_seq3
1735bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.48 TPM:2.49
1032 A_BomoSK_comp10503_c0_seq4
1387bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.57 TPM:0.57
1033 A_BomoSK_comp10503_c1_seq1
456bp
FPKM:2.94 TPM:2.96
1034 A_BomoSK_comp10504_c0_seq1
2323bp
 PREDICTED:_coiled-coil_domain-containing_protein_R3HCC1L_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035145 C exon-exon junction complex
FPKM:2.11 TPM:2.12
1035 A_BomoSK_comp10504_c0_seq2
2582bp
 PREDICTED:_coiled-coil_domain-containing_protein_R3HCC1L_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035145 C exon-exon junction complex
FPKM:3.47 TPM:3.49
1036 A_BomoSK_comp105055_c0_seq1
1298bp
 PREDICTED:_UDP-N-acetylglucosamine_transferase_subunit_ALG14_homolog_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
FPKM:3.54 TPM:3.56
1037 A_BomoSK_comp10505_c0_seq1
217bp
 3-oxoacyl-ACP_reductase_[Bradyrhizobium_sp._Ai1a-2]
FPKM:5.64 TPM:5.67
1038 A_BomoSK_comp10505_c1_seq1
2853bp
 PREDICTED:_cyclin-H_[Amyelois_transitella]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005675 C transcription factor TFIIH holo complex
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070985 C transcription factor TFIIK complex
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
FPKM:4.72 TPM:4.75
1039 A_BomoSK_comp10506_c0_seq1
1436bp
 PREDICTED:_zinc_finger_protein_431-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030154 P cell differentiation
GO:0042826 F histone deacetylase binding
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045668 P negative regulation of osteoblast differentiation
GO:0046872 F metal ion binding
FPKM:2.33 TPM:2.35
1040 A_BomoSK_comp10506_c0_seq2
1573bp
 PREDICTED:_zinc_finger_protein_431-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.33 TPM:3.35
1041 A_BomoSK_comp10507_c0_seq1
2052bp
 PREDICTED:_probable_cation-transporting_ATPase_13A3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005774 C vacuolar membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006457 P protein folding
GO:0006812 P cation transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0046872 F metal ion binding
GO:0098655 P cation transmembrane transport
FPKM:4.55 TPM:4.58
1042 A_BomoSK_comp10508_c0_seq1
423bp
 PREDICTED:_ER_degradation-enhancing_alpha-mannosidase-like_protein_3_[Plutella_xylostella]
GO:0004569 F glycoprotein endo-alpha-1,2-mannosidase activity
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006486 P protein glycosylation
GO:0006491 P N-glycan processing
GO:0006516 P glycoprotein catabolic process
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:1904382 P mannose trimming involved in glycoprotein ERAD pathway
FPKM:2.87 TPM:2.89
1043 A_BomoSK_comp10508_c0_seq2
3848bp
 PREDICTED:_ER_degradation-enhancing_alpha-mannosidase-like_protein_3_isoform_X1_[Amyelois_transitella]
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006486 P protein glycosylation
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:5.62 TPM:5.65
1044 A_BomoSK_comp105092_c0_seq1
318bp
FPKM:1.71 TPM:1.72
1045 A_BomoSK_comp10509_c0_seq1
224bp
FPKM:0.00 TPM:0.00
1046 A_BomoSK_comp10509_c0_seq2
1560bp
 PREDICTED:_peroxisomal_membrane_protein_11C_[Papilio_xuthus]
GO:0005515 F protein binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016559 P peroxisome fission
GO:0031231 C intrinsic component of peroxisomal membrane
GO:0043234 C protein-containing complex
GO:0044375 P regulation of peroxisome size
FPKM:5.61 TPM:5.64
1047 A_BomoSK_comp10510_c0_seq1
691bp
FPKM:3.35 TPM:3.37
1048 A_BomoSK_comp10511_c0_seq1
2266bp
 PREDICTED:_balbiani_ring_protein_3-like_isoform_X2_[Bombyx_mori]
GO:0004857 F enzyme inhibitor activity
GO:0005615 C extracellular space
GO:0008191 F metalloendopeptidase inhibitor activity
GO:0009653 P anatomical structure morphogenesis
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030198 P extracellular matrix organization
GO:0030414 F peptidase inhibitor activity
GO:0042060 P wound healing
FPKM:2.70 TPM:2.72
1049 A_BomoSK_comp10511_c0_seq2
2434bp
 PREDICTED:_zonadhesin-like_isoform_X1_[Bombyx_mori]
GO:0004857 F enzyme inhibitor activity
GO:0005615 C extracellular space
GO:0008191 F metalloendopeptidase inhibitor activity
GO:0009653 P anatomical structure morphogenesis
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030198 P extracellular matrix organization
GO:0030414 F peptidase inhibitor activity
GO:0042060 P wound healing
FPKM:3.18 TPM:3.20
1050 A_BomoSK_comp105120_c0_seq1
734bp
FPKM:5.15 TPM:5.18
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