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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
991 A_BomoSK_comp10484_c0_seq1
1256bp
 PREDICTED:_actin-binding_Rho-activating_protein-like_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0015031 P protein transport
GO:0015629 C actin cytoskeleton
GO:0030016 C myofibril
GO:0030017 C sarcomere
GO:0035025 P positive regulation of Rho protein signal transduction
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051091 P positive regulation of DNA-binding transcription factor activity
FPKM:8.21 TPM:8.25
992 A_BomoSK_comp1048599_c0_seq1
270bp
FPKM:0.66 TPM:0.66
993 A_BomoSK_comp10485_c0_seq1
1231bp
 PREDICTED:_magnesium_transporter_NIPA2_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015095 F magnesium ion transmembrane transporter activity
GO:0015693 P magnesium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1903830 P magnesium ion transmembrane transport
FPKM:3.63 TPM:3.65
994 A_BomoSK_comp10485_c0_seq2
1088bp
 PREDICTED:_magnesium_transporter_NIPA2_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015095 F magnesium ion transmembrane transporter activity
GO:0015693 P magnesium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1903830 P magnesium ion transmembrane transport
FPKM:1.76 TPM:1.77
995 A_BomoSK_comp10485_c0_seq3
687bp
 PREDICTED:_magnesium_transporter_NIPA2_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015095 F magnesium ion transmembrane transporter activity
GO:0015693 P magnesium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1903830 P magnesium ion transmembrane transport
FPKM:0.94 TPM:0.94
996 A_BomoSK_comp104862_c0_seq1
2371bp
FPKM:2.73 TPM:2.74
997 A_BomoSK_comp10486_c0_seq1
3592bp
 PREDICTED:_tubulin_polyglutamylase_TTLL4-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0006464 P cellular protein modification process
GO:0015631 F tubulin binding
GO:0016874 F ligase activity
GO:0018095 P protein polyglutamylation
GO:0018200 P peptidyl-glutamic acid modification
GO:0042995 C cell projection
GO:0070739 F protein-glutamic acid ligase activity
FPKM:4.92 TPM:4.95
998 A_BomoSK_comp104872_c0_seq1
623bp
 similar_to_hypothetical_protein_FLJ32949_(predicted)_[Rattus_norvegicus]
FPKM:4.78 TPM:4.81
999 A_BomoSK_comp10487_c0_seq1
2078bp
 PREDICTED:_DNA_replication_factor_Cdt1_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0007049 P cell cycle
FPKM:6.72 TPM:6.75
1000 A_BomoSK_comp10488_c0_seq1
1005bp
FPKM:2.96 TPM:2.97
1001 A_BomoSK_comp10488_c1_seq1
518bp
FPKM:2.73 TPM:2.74
1002 A_BomoSK_comp10489_c0_seq1
1178bp
 PREDICTED:_guanine_nucleotide_exchange_factor_DBS_isoform_X2_[Bombyx_mori]
GO:0002102 C podosome
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006801 P superoxide metabolic process
GO:0030054 C cell junction
GO:0035091 F phosphatidylinositol binding
GO:0042995 C cell projection
GO:0072593 P reactive oxygen species metabolic process
GO:0072675 P osteoclast fusion
FPKM:3.81 TPM:3.83
1003 A_BomoSK_comp10489_c0_seq2
1418bp
 PREDICTED:_guanine_nucleotide_exchange_factor_DBS_isoform_X1_[Bombyx_mori]
GO:0002102 C podosome
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006801 P superoxide metabolic process
GO:0030054 C cell junction
GO:0035091 F phosphatidylinositol binding
GO:0042995 C cell projection
GO:0072593 P reactive oxygen species metabolic process
GO:0072675 P osteoclast fusion
FPKM:3.56 TPM:3.58
1004 A_BomoSK_comp10491_c0_seq1
2842bp
FPKM:4.82 TPM:4.85
1005 A_BomoSK_comp1049396_c0_seq1
253bp
 PREDICTED:_uncharacterized_protein_LOC101747207_[Bombyx_mori]
FPKM:0.80 TPM:0.81
1006 A_BomoSK_comp10493_c0_seq1
1122bp
 PREDICTED:_condensin_complex_subunit_3_isoform_X2_[Papilio_xuthus]
FPKM:4.00 TPM:4.02
1007 A_BomoSK_comp10494_c0_seq1
540bp
 PREDICTED:_thy-1_membrane_glycoprotein-like_[Poecilia_formosa]
FPKM:3.20 TPM:3.21
1008 A_BomoSK_comp10494_c0_seq2
563bp
FPKM:3.60 TPM:3.62
1009 A_BomoSK_comp10494_c0_seq3
310bp
FPKM:0.46 TPM:0.46
1010 A_BomoSK_comp10495_c0_seq1
1858bp
 PREDICTED:_phosphopantothenoylcysteine_decarboxylase_[Papilio_polytes]
GO:0003824 F catalytic activity
GO:0004633 F phosphopantothenoylcysteine decarboxylase activity
GO:0005575 C cellular_component
GO:0015937 P coenzyme A biosynthetic process
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
FPKM:4.09 TPM:4.11
1011 A_BomoSK_comp10495_c0_seq2
512bp
 PREDICTED:_phosphopantothenoylcysteine_decarboxylase_[Papilio_polytes]
FPKM:0.63 TPM:0.63
1012 A_BomoSK_comp10495_c0_seq3
1967bp
 PREDICTED:_phosphopantothenoylcysteine_decarboxylase_[Papilio_polytes]
GO:0003824 F catalytic activity
GO:0004633 F phosphopantothenoylcysteine decarboxylase activity
GO:0005575 C cellular_component
GO:0015937 P coenzyme A biosynthetic process
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
FPKM:2.14 TPM:2.15
1013 A_BomoSK_comp104968_c0_seq1
651bp
 myosin_vi_[Danaus_plexippus]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0006997 P nucleus organization
GO:0007015 P actin filament organization
GO:0007051 P spindle organization
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0007291 P sperm individualization
GO:0007297 P ovarian follicle cell migration
GO:0007298 P border follicle cell migration
GO:0007391 P dorsal closure
GO:0007552 P metamorphosis
GO:0007560 P imaginal disc morphogenesis
GO:0008017 F microtubule binding
GO:0008104 P protein localization
GO:0008152 P metabolic process
GO:0008363 P larval chitin-based cuticle development
GO:0016333 P morphogenesis of follicular epithelium
GO:0016459 C myosin complex
GO:0016461 C unconventional myosin complex
GO:0019749 P cytoskeleton-dependent cytoplasmic transport, nurse cell to oocyte
GO:0030036 P actin cytoskeleton organization
GO:0030048 P actin filament-based movement
GO:0030139 C endocytic vesicle
GO:0030317 P flagellated sperm motility
GO:0030426 C growth cone
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0031476 C myosin VI complex
GO:0031941 C filamentous actin
GO:0032027 F myosin light chain binding
GO:0032880 P regulation of protein localization
GO:0032956 P regulation of actin cytoskeleton organization
GO:0032970 P regulation of actin filament-based process
GO:0040001 P establishment of mitotic spindle localization
GO:0042623 F ATP hydrolysis activity
GO:0043234 C protein-containing complex
GO:0045167 P asymmetric protein localization involved in cell fate determination
GO:0045172 C germline ring canal
GO:0045175 P basal protein localization
GO:0045178 C basal part of cell
GO:0045217 P cell-cell junction maintenance
GO:0045921 P positive regulation of exocytosis
GO:0047497 P mitochondrion transport along microtubule
GO:0048477 P oogenesis
GO:0051015 F actin filament binding
GO:0051647 P nucleus localization
GO:0055057 P neuroblast division
GO:0055059 P asymmetric neuroblast division
GO:0061024 P membrane organization
GO:0070856 F myosin VI light chain binding
GO:0070864 C sperm individualization complex
GO:0070865 C investment cone
FPKM:2.91 TPM:2.93
1014 A_BomoSK_comp10496_c0_seq1
486bp
 F1_capsule-anchoring_protein_precursor_[Serratia_marcescens]
FPKM:5.66 TPM:5.70
1015 A_BomoSK_comp10497_c0_seq1
1917bp
 PREDICTED:_kinesin-like_protein_Klp68D_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007018 P microtubule-based movement
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
FPKM:2.78 TPM:2.79
1016 A_BomoSK_comp10497_c0_seq2
1827bp
 PREDICTED:_kinesin-like_protein_Klp68D_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007018 P microtubule-based movement
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
FPKM:3.37 TPM:3.39
1017 A_BomoSK_comp10498_c0_seq1
1925bp
 PREDICTED:_leucine-zipper-like_transcriptional_regulator_1_[Amyelois_transitella]
GO:0003700 F DNA-binding transcription factor activity
GO:0005794 C Golgi apparatus
GO:0006355 P regulation of transcription, DNA-templated
GO:0009653 P anatomical structure morphogenesis
FPKM:0.45 TPM:0.45
1018 A_BomoSK_comp10498_c0_seq2
1910bp
 PREDICTED:_leucine-zipper-like_transcriptional_regulator_1_[Amyelois_transitella]
GO:0003700 F DNA-binding transcription factor activity
GO:0005794 C Golgi apparatus
GO:0006355 P regulation of transcription, DNA-templated
GO:0009653 P anatomical structure morphogenesis
FPKM:5.32 TPM:5.35
1019 A_BomoSK_comp10499_c0_seq1
753bp
 PREDICTED:_myotubularin-related_protein_6_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000187 P obsolete activation of MAPK activity
GO:0001568 P blood vessel development
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004708 F MAP kinase kinase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0010506 P regulation of autophagy
GO:0014065 P phosphatidylinositol 3-kinase signaling
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
FPKM:0.00 TPM:0.00
1020 A_BomoSK_comp10499_c0_seq2
2269bp
 PREDICTED:_myotubularin-related_protein_6_[Bombyx_mori]
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0010506 P regulation of autophagy
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
FPKM:1.58 TPM:1.59
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