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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1051 A_BomoSK_comp10512_c0_seq1
1229bp
FPKM:2.37 TPM:2.39
1052 A_BomoSK_comp10512_c1_seq1
337bp
 FAS1_domain-containing_protein_[Schizopora_paradoxa]
FPKM:0.00 TPM:0.00
1053 A_BomoSK_comp10512_c1_seq2
792bp
FPKM:2.00 TPM:2.01
1054 A_BomoSK_comp10512_c2_seq1
337bp
 FAS1_domain-containing_protein_[Schizopora_paradoxa]
FPKM:0.00 TPM:0.00
1055 A_BomoSK_comp10512_c2_seq2
792bp
FPKM:2.00 TPM:2.01
1056 A_BomoSK_comp10512_c3_seq1
1141bp
FPKM:1.00 TPM:1.00
1057 A_BomoSK_comp10512_c3_seq2
917bp
 PREDICTED:_trans-resveratrol_di-O-methyltransferase-like_[Nicotiana_sylvestris]
FPKM:2.78 TPM:2.80
1058 A_BomoSK_comp105134_c0_seq1
467bp
FPKM:5.24 TPM:5.27
1059 A_BomoSK_comp10513_c0_seq1
1380bp
 hypothetical_protein_X975_17494,_partial_[Stegodyphus_mimosarum]
FPKM:2.59 TPM:2.61
1060 A_BomoSK_comp105148_c0_seq1
314bp
FPKM:4.86 TPM:4.89
1061 A_BomoSK_comp10515_c0_seq1
1584bp
 uncharacterized_LOC106115108_[Papilio_xuthus]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000185 P obsolete activation of MAPKKK activity
GO:0001047 F core promoter sequence-specific DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006469 P negative regulation of protein kinase activity
GO:0006915 P apoptotic process
GO:0006950 P response to stress
GO:0006974 P cellular response to DNA damage stimulus
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007098 P centrosome cycle
GO:0042770 P signal transduction in response to DNA damage
GO:0043065 P positive regulation of apoptotic process
GO:0046330 P positive regulation of JNK cascade
GO:0051726 P regulation of cell cycle
GO:0071260 P cellular response to mechanical stimulus
GO:0071479 P cellular response to ionizing radiation
GO:0071850 P regulation of cell cycle
GO:1900745 P positive regulation of p38MAPK cascade
GO:2000379 P positive regulation of reactive oxygen species metabolic process
FPKM:3.90 TPM:3.92
1062 A_BomoSK_comp10515_c0_seq2
1372bp
 uncharacterized_LOC106115108_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0006950 P response to stress
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0051726 P regulation of cell cycle
FPKM:1.39 TPM:1.40
1063 A_BomoSK_comp10515_c0_seq3
1096bp
 uncharacterized_LOC106115108_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0006950 P response to stress
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0051726 P regulation of cell cycle
FPKM:51.62 TPM:51.92
1064 A_BomoSK_comp10515_c0_seq4
1308bp
 uncharacterized_LOC106115108_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0006950 P response to stress
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0051726 P regulation of cell cycle
FPKM:4.99 TPM:5.02
1065 A_BomoSK_comp10516_c0_seq1
1286bp
 PREDICTED:_UPF0585_protein_C16orf13_homolog_A_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:5.68 TPM:5.71
1066 A_BomoSK_comp105176_c0_seq1
730bp
 hypothetical_protein_GLOTRDRAFT_70178_[Gloeophyllum_trabeum_ATCC_11539]
FPKM:4.77 TPM:4.80
1067 A_BomoSK_comp10517_c0_seq1
211bp
FPKM:0.00 TPM:0.00
1068 A_BomoSK_comp10517_c1_seq1
222bp
FPKM:2.57 TPM:2.58
1069 A_BomoSK_comp10518_c0_seq1
1816bp
 PREDICTED:_tubulin-specific_chaperone_cofactor_E-like_protein_isoform_X2_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
FPKM:6.49 TPM:6.53
1070 A_BomoSK_comp10519_c0_seq1
1404bp
 PREDICTED:_protein_abrupt-like_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007423 P sensory organ development
GO:0007517 P muscle organ development
GO:0008039 P synaptic target recognition
GO:0016198 P axon choice point recognition
GO:0016203 P muscle attachment
GO:0016319 P mushroom body development
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0046872 F metal ion binding
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
FPKM:4.94 TPM:4.97
1071 A_BomoSK_comp105209_c0_seq1
905bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_probable_phospholipid-transporting_ATPase_VD_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
FPKM:4.62 TPM:4.65
1072 A_BomoSK_comp10520_c0_seq1
271bp
FPKM:3.25 TPM:3.27
1073 A_BomoSK_comp105210_c0_seq1
424bp
FPKM:3.81 TPM:3.84
1074 A_BomoSK_comp10521_c0_seq1
1638bp
 PREDICTED:_RNA_polymerase_II_subunit_A_C-terminal_domain_phosphatase_isoform_X2_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0004721 F phosphoprotein phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006366 P transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0010458 P exit from mitosis
GO:0015629 C actin cytoskeleton
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0030496 C midbody
GO:0050434 P positive regulation of viral transcription
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0061052 P negative regulation of cell growth involved in cardiac muscle cell development
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
FPKM:8.06 TPM:8.10
1075 A_BomoSK_comp10521_c0_seq2
1638bp
 PREDICTED:_RNA_polymerase_II_subunit_A_C-terminal_domain_phosphatase_isoform_X2_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0004721 F phosphoprotein phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006366 P transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0010458 P exit from mitosis
GO:0015629 C actin cytoskeleton
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0030496 C midbody
GO:0050434 P positive regulation of viral transcription
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0061052 P negative regulation of cell growth involved in cardiac muscle cell development
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
FPKM:0.00 TPM:0.00
1076 A_BomoSK_comp10522_c0_seq1
2532bp
 BmGATA_beta_isoform_3,_partial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:7.85 TPM:7.90
1077 A_BomoSK_comp10522_c0_seq2
2604bp
 PREDICTED:_transcription_factor_BCFI-like_isoform_X1_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:2.28 TPM:2.29
1078 A_BomoSK_comp10522_c0_seq3
2562bp
 PREDICTED:_transcription_factor_BCFI-like_isoform_X2_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:1.19 TPM:1.20
1079 A_BomoSK_comp105238_c0_seq1
1228bp
FPKM:3.67 TPM:3.69
1080 A_BomoSK_comp10523_c0_seq1
219bp
FPKM:1.36 TPM:1.36
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