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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

271

A_BomoOtmSK_comp101475_c0_seq1

409bp

Bomo_Chr23

tetratricopeptide_repeat_protein_7B_[Bombyx_mori]

FPKM:7.79 TPM:8.40

272

A_BomoOtmSK_comp10147_c0_seq1

1418bp

Bomo_Chr3

chitinase_domain-containing_protein_1_[Bombyx_mori]

GO:0004553	F	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568	F	chitinase activity
GO:0005576	C	extracellular region
GO:0005764	C	lysosome
GO:0005975	P	carbohydrate metabolic process
GO:0006032	P	chitin catabolic process
GO:0006954	P	inflammatory response
GO:0008061	F	chitin binding

FPKM:10.55 TPM:11.38

273

A_BomoOtmSK_comp10148_c0_seq1

3812bp

Bomo_Chr5

uncharacterized_protein_LOC101741379_[Bombyx_mori]

GO:0003676	F	nucleic acid binding
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0008270	F	zinc ion binding
GO:0046872	F	metal ion binding

FPKM:31.47 TPM:33.93

274

A_BomoOtmSK_comp10149_c0_seq1

389bp

Bomo_Chr17

FPKM:1.67 TPM:1.80

275

A_BomoOtmSK_comp10150_c0_seq1

631bp

Bomo_Chr11

zinc_finger_protein_57_isoform_X4_[Bombyx_mori]

GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005622	C	intracellular anatomical structure
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding

FPKM:1.64 TPM:1.76

276

A_BomoOtmSK_comp10151_c0_seq1

2062bp

Bomo_Chr14

E3_ubiquitin-protein_ligase_UBR2_[Danaus_plexippus_plexippus]

GO:0000151	C	ubiquitin ligase complex
GO:0000502	C	proteasome complex
GO:0004842	F	ubiquitin-protein transferase activity
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0008270	F	zinc ion binding
GO:0016567	P	protein ubiquitination
GO:0016874	F	ligase activity
GO:0030163	P	protein catabolic process
GO:0032007	P	negative regulation of TOR signaling
GO:0046872	F	metal ion binding
GO:0061630	F	ubiquitin protein ligase activity
GO:0070728	F	leucine binding
GO:0071233	P	cellular response to leucine
GO:0071596	P	ubiquitin-dependent protein catabolic process via the N-end rule pathway

FPKM:6.42 TPM:6.92

277

A_BomoOtmSK_comp10152_c0_seq1

1230bp

Bomo_Chr19

FPKM:1.53 TPM:1.65

278

A_BomoOtmSK_comp1015345_c0_seq1

270bp

Bomo_Chr10

endonuclease-reverse_transcriptase_[Bombyx_mori]

FPKM:0.00 TPM:0.00

279

A_BomoOtmSK_comp10153_c0_seq1

1203bp

Bomo_Chr24

aldose_reductase_isoform_X2_[Bombyx_mori]

GO:0001894	P	tissue homeostasis
GO:0004032	F	alditol:NADP+ 1-oxidoreductase activity
GO:0005615	C	extracellular space
GO:0005654	C	nucleoplasm
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0005996	P	monosaccharide metabolic process
GO:0006061	P	sorbitol biosynthetic process
GO:0009414	P	response to water deprivation
GO:0010033	P	response to organic substance
GO:0016491	F	oxidoreductase activity
GO:0018931	P	naphthalene catabolic process
GO:0031098	P	stress-activated protein kinase signaling cascade
GO:0032838	C	plasma membrane bounded cell projection cytoplasm
GO:0033010	C	paranodal junction
GO:0042415	P	norepinephrine metabolic process
GO:0042629	C	mast cell granule
GO:0043220	C	Schmidt-Lanterman incisure
GO:0043795	F	glyceraldehyde oxidoreductase activity
GO:0044597	P	daunorubicin metabolic process
GO:0044598	P	doxorubicin metabolic process
GO:0046427	P	positive regulation of receptor signaling pathway via JAK-STAT
GO:0048471	C	perinuclear region of cytoplasm
GO:0048661	P	positive regulation of smooth muscle cell proliferation
GO:0055114	P	obsolete oxidation-reduction process
GO:0060135	P	maternal process involved in female pregnancy
GO:0070062	C	extracellular exosome
GO:0070301	P	cellular response to hydrogen peroxide
GO:0072061	P	inner medullary collecting duct development
GO:0097066	P	response to thyroid hormone
GO:0097238	P	cellular response to methylglyoxal
GO:0097454	C	Schwann cell microvillus
GO:1901653	P	cellular response to peptide

FPKM:62.67 TPM:67.57

280

A_BomoOtmSK_comp101544_c0_seq1

295bp

Bomo_Chr24

FPKM:2.26 TPM:2.44

281

A_BomoOtmSK_comp10154_c0_seq1

381bp

Bomo_Chr6

FPKM:1.52 TPM:1.63

282

A_BomoOtmSK_comp10155_c0_seq1

752bp

Bomo_Chr7

aryl_hydrocarbon_receptor_[Bombyx_mori]

FPKM:1.29 TPM:1.39

283

A_BomoOtmSK_comp10156_c0_seq1

1087bp

Bomo_Chr12

FPKM:1.24 TPM:1.34

284

A_BomoOtmSK_comp1015730_c0_seq1

201bp

Bomo_Chr4

FPKM:0.00 TPM:0.00

285

A_BomoOtmSK_comp10157_c0_seq1

1923bp

Bomo_Chr12

WASH_complex_subunit_4_isoform_X2_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005654	C	nucleoplasm
GO:0005768	C	endosome
GO:0005769	C	early endosome
GO:0006810	P	transport
GO:0007032	P	endosome organization
GO:0015031	P	protein transport
GO:0016197	P	endosomal transport
GO:0031083	C	BLOC-1 complex
GO:0071203	C	WASH complex

FPKM:1.79 TPM:1.93

286

A_BomoOtmSK_comp10158_c0_seq1

375bp

Bomo_Chr12

solute_carrier_family_52,_riboflavin_transporter,_member_3_[Bombyx_mori]

GO:0005886	C	plasma membrane
GO:0006810	P	transport
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane

FPKM:4.91 TPM:5.30

287

A_BomoOtmSK_comp1015992_c0_seq1

295bp

Bomo_Chr12

cadherin-86C_[Bombyx_mori]

FPKM:1.13 TPM:1.22

288

A_BomoOtmSK_comp10159_c0_seq1

1313bp

Bomo_Chr4

ragulator_complex_protein_LAMTOR5_[Bombyx_mori]

GO:0005085	F	guanyl-nucleotide exchange factor activity
GO:0005737	C	cytoplasm
GO:0005764	C	lysosome
GO:0008361	P	regulation of cell size
GO:0019079	P	viral genome replication
GO:0032008	P	positive regulation of TOR signaling
GO:0032947	F	molecular adaptor activity
GO:0043066	P	negative regulation of apoptotic process
GO:0043154	P	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043547	P	positive regulation of GTPase activity
GO:0061462	P	protein localization to lysosome
GO:0071230	P	cellular response to amino acid stimulus
GO:0071986	C	Ragulator complex

FPKM:6.23 TPM:6.72

289

A_BomoOtmSK_comp10160_c0_seq1

1360bp

Bomo_Chr4

methyltransferase-like_protein_13_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0008150	P	biological_process
GO:0008152	P	metabolic process
GO:0008168	F	methyltransferase activity
GO:0016740	F	transferase activity
GO:0032259	P	methylation

FPKM:29.40 TPM:31.70

290

A_BomoOtmSK_comp10161_c0_seq1

223bp

Bomo_Scaf063

rRNA_intron-encoded_homing_endonuclease,_partial_[Cenchrus_americanus]

FPKM:6.27 TPM:6.76

291

A_BomoOtmSK_comp10162_c0_seq1

210bp

Bomo_Chr16

FPKM:1.14 TPM:1.23

292

A_BomoOtmSK_comp1016388_c0_seq1

259bp

Bomo_Chr9

FPKM:1.61 TPM:1.74

293

A_BomoOtmSK_comp10163_c0_seq1

2321bp

Bomo_Chr2

uncharacterized_protein_LOC101738867_[Bombyx_mori]

GO:0001658	P	branching involved in ureteric bud morphogenesis
GO:0001822	P	kidney development
GO:0003007	P	heart morphogenesis
GO:0005509	F	calcium ion binding
GO:0005515	F	protein binding
GO:0005622	C	intracellular anatomical structure
GO:0005886	C	plasma membrane
GO:0007009	P	plasma membrane organization
GO:0007155	P	cell adhesion
GO:0007156	P	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157	P	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0021987	P	cerebral cortex development
GO:0022008	P	neurogenesis
GO:0035329	P	hippo signaling
GO:0043931	P	ossification involved in bone maturation
GO:0045177	C	apical part of cell
GO:0048565	P	digestive tract development
GO:0060122	P	inner ear receptor cell stereocilium organization
GO:0070062	C	extracellular exosome
GO:0072307	P	regulation of metanephric nephron tubule epithelial cell differentiation

FPKM:0.16 TPM:0.18

294

A_BomoOtmSK_comp10163_c0_seq2

5297bp

Bomo_Chr2

uncharacterized_protein_LOC101738867_[Bombyx_mori]

GO:0005509	F	calcium ion binding
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005856	C	cytoskeleton
GO:0005882	C	intermediate filament
GO:0005886	C	plasma membrane
GO:0007155	P	cell adhesion
GO:0007275	P	multicellular organism development
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0030054	C	cell junction
GO:0030056	C	hemidesmosome
GO:0031012	C	extracellular matrix
GO:0098733	C	hemidesmosome associated protein complex

FPKM:6.08 TPM:6.55

295

A_BomoOtmSK_comp10164_c0_seq1

553bp

Bomo_Chr2

actin-like_protein_6A_[Bombyx_mori]

GO:0005634	C	nucleus
GO:0006281	P	DNA repair
GO:0006310	P	DNA recombination
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006974	P	cellular response to DNA damage stimulus
GO:0007399	P	nervous system development
GO:0016568	P	chromatin organization
GO:0035267	C	NuA4 histone acetyltransferase complex
GO:0040008	P	regulation of growth
GO:0043044	P	chromatin remodeling
GO:0043967	P	histone H4 acetylation
GO:0043968	P	histone H2A acetylation
GO:0071564	C	npBAF complex

FPKM:2.48 TPM:2.67

296

A_BomoOtmSK_comp10164_c0_seq2

510bp

Bomo_Chr2

actin-like_protein_6A_[Bombyx_mori]

GO:0005634	C	nucleus
GO:0006281	P	DNA repair
GO:0006310	P	DNA recombination
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006974	P	cellular response to DNA damage stimulus
GO:0007399	P	nervous system development
GO:0016568	P	chromatin organization
GO:0035267	C	NuA4 histone acetyltransferase complex
GO:0040008	P	regulation of growth
GO:0043044	P	chromatin remodeling
GO:0043967	P	histone H4 acetylation
GO:0043968	P	histone H2A acetylation
GO:0071564	C	npBAF complex

FPKM:9.70 TPM:10.46

297

A_BomoOtmSK_comp1016534_c0_seq1

207bp

Bomo_Chr12

PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]

GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0005575	C	cellular_component
GO:0008150	P	biological_process
GO:0015074	P	DNA integration
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane