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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
301 A_BomoOtmSK_comp10165_c0_seq1
875bp
 uncharacterized_protein_LOC101741550_[Bombyx_mori]
FPKM:2.18 TPM:2.35
302 A_BomoOtmSK_comp10165_c0_seq2
861bp
 uncharacterized_protein_LOC101741550_[Bombyx_mori]
FPKM:1.79 TPM:1.93
303 A_BomoOtmSK_comp1016610_c0_seq1
310bp
FPKM:0.33 TPM:0.36
304 A_BomoOtmSK_comp1016617_c0_seq1
311bp
FPKM:0.66 TPM:0.72
305 A_BomoOtmSK_comp10166_c0_seq1
597bp
FPKM:2.81 TPM:3.03
306 A_BomoOtmSK_comp10166_c1_seq1
1111bp
 E3_ubiquitin-protein_ligase_TRIM33_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005719 C euchromatin
GO:0005726 C perichromatin fibrils
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010628 P positive regulation of gene expression
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0016922 F nuclear receptor binding
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030163 P protein catabolic process
GO:0031647 P regulation of protein stability
GO:0034056 F estrogen response element binding
GO:0035064 F methylated histone binding
GO:0042981 P regulation of apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0055074 P calcium ion homeostasis
GO:0061630 F ubiquitin protein ligase activity
GO:0070562 P regulation of vitamin D receptor signaling pathway
GO:0070577 F lysine-acetylated histone binding
GO:0071391 P cellular response to estrogen stimulus
GO:1901796 P regulation of signal transduction by p53 class mediator
FPKM:3.82 TPM:4.11
307 A_BomoOtmSK_comp10167_c0_seq1
3592bp
 uncharacterized_protein_LOC101746345_isoform_X1_[Bombyx_mori]
FPKM:15.02 TPM:16.19
308 A_BomoOtmSK_comp10167_c0_seq2
3577bp
 uncharacterized_protein_LOC101746345_isoform_X2_[Bombyx_mori]
FPKM:13.40 TPM:14.45
309 A_BomoOtmSK_comp101683_c0_seq1
779bp
 LOW_QUALITY_PROTEIN:_tuberin_[Bombyx_mori]
GO:0001843 P neural tube closure
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006469 P negative regulation of protein kinase activity
GO:0006606 P protein import into nucleus
GO:0006897 P endocytosis
GO:0007050 P regulation of cell cycle
GO:0007507 P heart development
GO:0008104 P protein localization
GO:0008285 P negative regulation of cell population proliferation
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016192 P vesicle-mediated transport
GO:0019902 F phosphatase binding
GO:0030100 P regulation of endocytosis
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031267 F small GTPase binding
GO:0032007 P negative regulation of TOR signaling
GO:0033596 C TSC1-TSC2 complex
GO:0042803 F protein homodimerization activity
GO:0043491 P protein kinase B signaling
GO:0043547 P positive regulation of GTPase activity
GO:0046626 P regulation of insulin receptor signaling pathway
GO:0046627 P negative regulation of insulin receptor signaling pathway
GO:0048009 P insulin-like growth factor receptor signaling pathway
GO:0048471 C perinuclear region of cytoplasm
GO:0050918 P positive chemotaxis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051726 P regulation of cell cycle
GO:0051898 P negative regulation of protein kinase B signaling
FPKM:3.84 TPM:4.14
310 A_BomoOtmSK_comp10168_c0_seq1
426bp
FPKM:0.56 TPM:0.60
311 A_BomoOtmSK_comp10168_c0_seq2
367bp
FPKM:0.90 TPM:0.97
312 A_BomoOtmSK_comp1016_c0_seq1
337bp
FPKM:1.11 TPM:1.20
313 A_BomoOtmSK_comp101709_c0_seq1
522bp
 troponin_C_isoform_X1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
FPKM:6.48 TPM:6.98
314 A_BomoOtmSK_comp10170_c0_seq1
442bp
FPKM:0.33 TPM:0.36
315 A_BomoOtmSK_comp10171_c0_seq1
2539bp
 ribosomal_protein_S6_kinase_alpha-4_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035175 F histone kinase activity (H3-S10 specific)
GO:0035556 P intracellular signal transduction
GO:0043987 P histone H3-S10 phosphorylation
GO:0043988 P histone H3-S28 phosphorylation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:7.97 TPM:8.60
316 A_BomoOtmSK_comp10171_c0_seq2
2604bp
 ribosomal_protein_S6_kinase_alpha-5_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035175 F histone kinase activity (H3-S10 specific)
GO:0035556 P intracellular signal transduction
GO:0043987 P histone H3-S10 phosphorylation
GO:0043988 P histone H3-S28 phosphorylation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:2.47 TPM:2.66
317 A_BomoOtmSK_comp101734_c0_seq1
745bp
FPKM:2.84 TPM:3.06
318 A_BomoOtmSK_comp10173_c0_seq1
1508bp
 RING_finger_protein_145_isoform_X2_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
FPKM:11.12 TPM:11.99
319 A_BomoOtmSK_comp10173_c0_seq2
943bp
FPKM:0.00 TPM:0.00
320 A_BomoOtmSK_comp101741_c0_seq1
2992bp
 claspin-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0033314 P mitotic DNA replication checkpoint signaling
FPKM:2.93 TPM:3.16
321 A_BomoOtmSK_comp10174_c0_seq1
372bp
FPKM:0.68 TPM:0.73
322 A_BomoOtmSK_comp10174_c0_seq2
319bp
FPKM:0.31 TPM:0.34
323 A_BomoOtmSK_comp10174_c0_seq3
475bp
FPKM:1.62 TPM:1.75
324 A_BomoOtmSK_comp10175_c0_seq1
1112bp
 uncharacterized_protein_LOC101742337_isoform_X1_[Bombyx_mori]
GO:0000794 C condensed nuclear chromosome
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0031519 C PcG protein complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:9.65 TPM:10.41
325 A_BomoOtmSK_comp10175_c0_seq2
1164bp
 uncharacterized_protein_LOC101742337_isoform_X1_[Bombyx_mori]
GO:0000794 C condensed nuclear chromosome
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0031519 C PcG protein complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:0.63 TPM:0.68
326 A_BomoOtmSK_comp10176_c0_seq1
3842bp
 Metalloprotease_[Operophtera_brumata]
GO:0003824 F catalytic activity
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:0.75 TPM:0.81
327 A_BomoOtmSK_comp10176_c0_seq2
3663bp
 Metalloprotease_[Operophtera_brumata]
GO:0003824 F catalytic activity
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:6.67 TPM:7.20
328 A_BomoOtmSK_comp10178_c0_seq1
1453bp
 couch_potato_like_protein_[Danaus_plexippus_plexippus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0022611 P dormancy process
GO:0035206 P regulation of hemocyte proliferation
GO:0042048 P olfactory behavior
FPKM:1.77 TPM:1.91
329 A_BomoOtmSK_comp10179_c0_seq1
217bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:3.99 TPM:4.30
330 A_BomoOtmSK_comp10180_c0_seq1
1933bp
 uncharacterized_protein_LOC101746182_[Bombyx_mori]
FPKM:11.61 TPM:12.52
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