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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
241 A_BomoOtmSK_comp10129_c0_seq1
883bp
FPKM:1.44 TPM:1.55
242 A_BomoOtmSK_comp10129_c0_seq2
1928bp
 protein_tyrosine_phosphatase_isoform_X2_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005740 C mitochondrial envelope
GO:0006470 P protein dephosphorylation
GO:0007176 P regulation of epidermal growth factor-activated receptor activity
GO:0007377 P germ-band extension
GO:0007411 P axon guidance
GO:0008285 P negative regulation of cell population proliferation
GO:0012505 C endomembrane system
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0031647 P regulation of protein stability
GO:0032880 P regulation of protein localization
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0043407 P negative regulation of MAP kinase activity
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046627 P negative regulation of insulin receptor signaling pathway
GO:0048471 C perinuclear region of cytoplasm
GO:0050732 P negative regulation of peptidyl-tyrosine phosphorylation
GO:0071456 P cellular response to hypoxia
FPKM:1.12 TPM:1.21
243 A_BomoOtmSK_comp10129_c0_seq3
2427bp
 protein_tyrosine_phosphatase_isoform_X1_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005740 C mitochondrial envelope
GO:0006470 P protein dephosphorylation
GO:0007176 P regulation of epidermal growth factor-activated receptor activity
GO:0007377 P germ-band extension
GO:0007411 P axon guidance
GO:0008285 P negative regulation of cell population proliferation
GO:0012505 C endomembrane system
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0031647 P regulation of protein stability
GO:0032880 P regulation of protein localization
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0043407 P negative regulation of MAP kinase activity
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046627 P negative regulation of insulin receptor signaling pathway
GO:0048471 C perinuclear region of cytoplasm
GO:0050732 P negative regulation of peptidyl-tyrosine phosphorylation
GO:0071456 P cellular response to hypoxia
FPKM:1.45 TPM:1.57
244 A_BomoOtmSK_comp101303_c0_seq1
1569bp
FPKM:2.93 TPM:3.16
245 A_BomoOtmSK_comp10130_c0_seq1
818bp
 zinc_finger_protein_675_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:0.88 TPM:0.95
246 A_BomoOtmSK_comp10131_c0_seq1
616bp
 uncharacterized_protein_LOC101739782_[Bombyx_mori]
FPKM:42.11 TPM:45.40
247 A_BomoOtmSK_comp101324_c0_seq1
266bp
uncharacterized_protein_LOC110014506_[Oryzias_latipes]
FPKM:5.47 TPM:5.90
248 A_BomoOtmSK_comp10132_c0_seq1
1553bp
 biotin--protein_ligase_isoform_X1_[Bombyx_mori]
FPKM:2.87 TPM:3.09
249 A_BomoOtmSK_comp10133_c0_seq1
667bp
FPKM:2.85 TPM:3.07
250 A_BomoOtmSK_comp10134_c0_seq1
339bp
FPKM:0.82 TPM:0.89
251 A_BomoOtmSK_comp10135_c0_seq1
910bp
 probable_low-specificity_L-threonine_aldolase_2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004793 F threonine aldolase activity
GO:0005829 C cytosol
GO:0006520 P cellular amino acid metabolic process
GO:0006545 P glycine biosynthetic process
GO:0006567 P threonine catabolic process
GO:0008732 F L-allo-threonine aldolase activity
GO:0016829 F lyase activity
FPKM:10.69 TPM:11.52
252 A_BomoOtmSK_comp10136_c0_seq1
3416bp
 protein_windpipe_[Bombyx_mori]
GO:0001894 P tissue homeostasis
GO:0004860 F protein kinase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006469 P negative regulation of protein kinase activity
GO:0008039 P synaptic target recognition
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019221 P cytokine-mediated signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0060438 P trachea development
GO:2000647 P negative regulation of stem cell proliferation
FPKM:27.22 TPM:29.35
253 A_BomoOtmSK_comp10137_c0_seq1
1048bp
FPKM:0.80 TPM:0.86
254 A_BomoOtmSK_comp101384_c0_seq1
267bp
FPKM:6.40 TPM:6.90
255 A_BomoOtmSK_comp10138_c0_seq1
1234bp
 dysbindin_protein_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0008021 C synaptic vesicle
GO:0008057 P eye pigment granule organization
GO:0008344 P adult locomotory behavior
GO:0008355 P olfactory learning
GO:0031083 C BLOC-1 complex
GO:0045963 P negative regulation of dopamine metabolic process
GO:0048047 P mating behavior, sex discrimination
GO:0048167 P regulation of synaptic plasticity
GO:0050807 P regulation of synapse organization
GO:0051968 P positive regulation of synaptic transmission, glutamatergic
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
FPKM:8.59 TPM:9.26
256 A_BomoOtmSK_comp101391_c0_seq1
893bp
 uncharacterized_protein_LOC101740090_[Bombyx_mori]
FPKM:3.89 TPM:4.20
257 A_BomoOtmSK_comp10139_c0_seq1
783bp
 5-oxoprolinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006750 P glutathione biosynthetic process
GO:0016787 F hydrolase activity
GO:0017168 F 5-oxoprolinase (ATP-hydrolyzing) activity
FPKM:2.11 TPM:2.28
258 A_BomoOtmSK_comp10139_c0_seq2
1951bp
 5-oxoprolinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006750 P glutathione biosynthetic process
GO:0016787 F hydrolase activity
GO:0017168 F 5-oxoprolinase (ATP-hydrolyzing) activity
FPKM:8.99 TPM:9.69
259 A_BomoOtmSK_comp10141_c0_seq1
370bp
FPKM:11.46 TPM:12.35
260 A_BomoOtmSK_comp10142_c0_seq1
1958bp
 vacuolar_ATP_synthase_21_kDa_proteolipid_subunit_[Bombyx_mori]
GO:0000220 C vacuolar proton-transporting V-type ATPase, V0 domain
GO:0005768 C endosome
GO:0005773 C vacuole
GO:0005774 C vacuolar membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007035 P vacuolar acidification
GO:0015078 F proton transmembrane transporter activity
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033177 C proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0033179 C proton-transporting V-type ATPase, V0 domain
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
FPKM:22.94 TPM:24.73
261 A_BomoOtmSK_comp1014366_c0_seq1
223bp
FPKM:0.90 TPM:0.97
262 A_BomoOtmSK_comp10143_c0_seq1
2701bp
 inhibitor_of_apoptosis_protein_isoform_X1_[Bombyx_mori]
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:9.00 TPM:9.70
263 A_BomoOtmSK_comp10143_c0_seq2
2669bp
 inhibitor_of_apoptosis_protein_[Bombyx_mori]
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:11.22 TPM:12.10
264 A_BomoOtmSK_comp1014414_c0_seq1
284bp
FPKM:0.00 TPM:0.00
265 A_BomoOtmSK_comp1014434_c0_seq1
235bp
FPKM:1.48 TPM:1.59
266 A_BomoOtmSK_comp10144_c1_seq1
727bp
 uncharacterized_protein_LOC101736832_[Bombyx_mori]
FPKM:8.64 TPM:9.32
267 A_BomoOtmSK_comp101454_c0_seq1
413bp
FPKM:1.87 TPM:2.01
268 A_BomoOtmSK_comp10145_c0_seq1
599bp
FPKM:1.66 TPM:1.79
269 A_BomoOtmSK_comp10146_c0_seq1
1439bp
 probable_nucleoporin_Nup54_isoform_X1_[Bombyx_mori]
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006605 P protein targeting
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0015031 P protein transport
GO:0017056 F structural constituent of nuclear pore
GO:0036228 P protein localization to nuclear inner membrane
GO:0044613 C nuclear pore central transport channel
GO:0051028 P mRNA transport
FPKM:9.21 TPM:9.93
270 A_BomoOtmSK_comp10146_c0_seq2
569bp
 probable_nucleoporin_Nup54_isoform_X1_[Bombyx_mori]
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006605 P protein targeting
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0015031 P protein transport
GO:0017056 F structural constituent of nuclear pore
GO:0036228 P protein localization to nuclear inner membrane
GO:0044613 C nuclear pore central transport channel
GO:0051028 P mRNA transport
FPKM:0.58 TPM:0.62
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