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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
661 A_BomoSK_comp10326_c1_seq1
329bp
FPKM:1.19 TPM:1.20
662 A_BomoSK_comp103279_c0_seq1
398bp
FPKM:4.02 TPM:4.04
663 A_BomoSK_comp10327_c0_seq1
1555bp
 PREDICTED:_uncharacterized_protein_LOC101744657_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0042594 P response to starvation
GO:0044351 P macropinocytosis
FPKM:5.87 TPM:5.91
664 A_BomoSK_comp10328_c0_seq1
4603bp
 N-ethylmaleimide_sensitive_fusion_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0008021 C synaptic vesicle
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0032403 F protein-containing complex binding
GO:0035494 P SNARE complex disassembly
GO:0043001 P Golgi to plasma membrane protein transport
GO:0043195 C terminal bouton
GO:0046872 F metal ion binding
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048211 P Golgi vesicle docking
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
FPKM:5.99 TPM:6.03
665 A_BomoSK_comp10329_c0_seq1
262bp
FPKM:2.16 TPM:2.17
666 A_BomoSK_comp10329_c0_seq2
318bp
 hypothetical_protein_[alpha_proteobacterium_AAP81b]
FPKM:2.57 TPM:2.59
667 A_BomoSK_comp1032_c0_seq1
324bp
 PREDICTED:_uncharacterized_protein_LOC106710902_[Papilio_machaon]
FPKM:1.64 TPM:1.65
668 A_BomoSK_comp10330_c0_seq1
2631bp
 PREDICTED:_uncharacterized_protein_LOC101745407_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:1.27 TPM:1.28
669 A_BomoSK_comp10330_c0_seq2
2503bp
 PREDICTED:_uncharacterized_protein_LOC101745407_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:3.65 TPM:3.68
670 A_BomoSK_comp10331_c0_seq1
915bp
 30K_protein_20,_partial_[Bombyx_mori]
GO:0005576 C extracellular region
FPKM:2.63 TPM:2.64
671 A_BomoSK_comp10332_c0_seq1
303bp
 PREDICTED:_DNA_primase_small_subunit_[Bombyx_mori]
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:1990077 C primosome complex
FPKM:1.26 TPM:1.27
672 A_BomoSK_comp10332_c0_seq2
1164bp
 PREDICTED:_DNA_primase_small_subunit_[Bombyx_mori]
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:1990077 C primosome complex
FPKM:6.35 TPM:6.39
673 A_BomoSK_comp10333_c0_seq1
2899bp
 PREDICTED:_uncharacterized_protein_LOC101738379_[Bombyx_mori]
FPKM:6.37 TPM:6.41
674 A_BomoSK_comp10334_c0_seq1
1763bp
 hypothetical_protein_RR46_14211_[Papilio_xuthus]
FPKM:6.60 TPM:6.64
675 A_BomoSK_comp10334_c0_seq2
626bp
 hypothetical_protein_KGM_04834_[Danaus_plexippus]
FPKM:5.65 TPM:5.68
676 A_BomoSK_comp10335_c0_seq1
2217bp
 PREDICTED:_pentatricopeptide_repeat-containing_protein_1,_mitochondrial_[Plutella_xylostella]
GO:0000049 F tRNA binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008033 P tRNA processing
GO:0042780 P tRNA 3'-end processing
FPKM:4.90 TPM:4.93
677 A_BomoSK_comp10336_c0_seq1
4485bp
 putative_epidermal_growth_factor_receptor_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
FPKM:4.80 TPM:4.82
678 A_BomoSK_comp10336_c0_seq2
252bp
 PREDICTED:_epidermal_growth_factor_receptor_isoform_X1_[Papilio_xuthus]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000578 P embryonic axis specification
GO:0001654 P eye development
GO:0001709 P cell fate determination
GO:0001742 P oenocyte differentiation
GO:0001745 P compound eye morphogenesis
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0001752 P compound eye photoreceptor fate commitment
GO:0002009 P morphogenesis of an epithelium
GO:0003015 P heart process
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0004888 F transmembrane signaling receptor activity
GO:0005006 F epidermal growth factor-activated receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007309 P oocyte axis specification
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007314 P oocyte anterior/posterior axis specification
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007367 P segment polarity determination
GO:0007369 P gastrulation
GO:0007390 P germ-band shortening
GO:0007391 P dorsal closure
GO:0007420 P brain development
GO:0007421 P stomatogastric nervous system development
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007431 P salivary gland development
GO:0007443 P Malpighian tubule morphogenesis
GO:0007444 P imaginal disc development
GO:0007447 P imaginal disc pattern formation
GO:0007455 P eye-antennal disc morphogenesis
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007469 P antennal development
GO:0007472 P wing disc morphogenesis
GO:0007473 P wing disc proximal/distal pattern formation
GO:0007474 P imaginal disc-derived wing vein specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007477 P notum development
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007482 P haltere development
GO:0008071 P maternal determination of dorsal/ventral axis, ovarian follicular epithelium, soma encoded
GO:0008284 P positive regulation of cell population proliferation
GO:0008313 F gurken-activated receptor activity
GO:0008314 P gurken signaling pathway
GO:0008340 P determination of adult lifespan
GO:0008355 P olfactory learning
GO:0008406 P gonad development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0009792 P embryo development ending in birth or egg hatching
GO:0009880 P embryonic pattern specification
GO:0009950 P dorsal/ventral axis specification
GO:0009952 P anterior/posterior pattern specification
GO:0009953 P dorsal/ventral pattern formation
GO:0010906 P regulation of glucose metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016203 P muscle attachment
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016318 P ommatidial rotation
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0016333 P morphogenesis of follicular epithelium
GO:0016337 P cell-cell adhesion
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0022008 P neurogenesis
GO:0030031 P cell projection assembly
GO:0030381 P chorion-containing eggshell pattern formation
GO:0030718 P germ-line stem cell population maintenance
GO:0035088 P establishment or maintenance of apical/basal cell polarity
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0035202 P tracheal pit formation in open tracheal system
GO:0035225 P determination of genital disc primordium
GO:0035230 C cytoneme
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035309 P wing and notum subfield formation
GO:0035310 P notum cell fate specification
GO:0042676 P compound eye cone cell fate commitment
GO:0042694 P muscle cell fate specification
GO:0043066 P negative regulation of apoptotic process
GO:0045165 P cell fate commitment
GO:0045466 P R7 cell differentiation
GO:0045468 P regulation of R8 cell spacing in compound eye
GO:0045610 P regulation of hemocyte differentiation
GO:0046673 P negative regulation of compound eye retinal cell programmed cell death
GO:0046843 P dorsal appendage formation
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0048139 P female germ-line cyst encapsulation
GO:0048140 P male germ-line cyst encapsulation
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048546 P digestive tract morphogenesis
GO:0048749 P compound eye development
GO:0048865 P stem cell fate commitment
GO:0061331 P epithelial cell proliferation involved in Malpighian tubule morphogenesis
GO:0090303 P positive regulation of wound healing
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
GO:2001234 P negative regulation of apoptotic signaling pathway
FPKM:3.25 TPM:3.27
679 A_BomoSK_comp10337_c0_seq1
1742bp
 PREDICTED:_rhomboid-related_protein_2_isoform_X2_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005509 F calcium ion binding
GO:0005743 C mitochondrial inner membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
FPKM:2.02 TPM:2.04
680 A_BomoSK_comp10338_c0_seq1
2890bp
 PREDICTED:_TBC1_domain_family_member_23_[Papilio_polytes]
FPKM:2.48 TPM:2.50
681 A_BomoSK_comp10338_c0_seq2
3854bp
 PREDICTED:_TBC1_domain_family_member_23_[Papilio_polytes]
FPKM:3.67 TPM:3.69
682 A_BomoSK_comp10339_c0_seq1
1619bp
 hypothetical_protein_KGM_15110_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:6.01 TPM:6.04
683 A_BomoSK_comp10340_c0_seq1
1330bp
 PREDICTED:_prestin_isoform_X1_[Bombyx_mori]
GO:0001503 P ossification
GO:0005254 F chloride channel activity
GO:0005575 C cellular_component
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0042391 P regulation of membrane potential
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:1.92 TPM:1.93
684 A_BomoSK_comp10340_c1_seq1
908bp
 PREDICTED:_prestin_isoform_X2_[Bombyx_mori]
GO:0002931 P response to ischemia
GO:0005254 F chloride channel activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007605 P sensory perception of sound
GO:0008134 F transcription factor binding
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0008360 P regulation of cell shape
GO:0009751 P response to salicylic acid
GO:0010996 P response to auditory stimulus
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0015755 P fructose transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0030507 F spectrin binding
GO:0034220 P ion transmembrane transport
GO:0034766 P negative regulation of ion transmembrane transport
GO:0035864 P response to potassium ion
GO:0042391 P regulation of membrane potential
GO:0042493 P response to xenobiotic stimulus
GO:0042803 F protein homodimerization activity
GO:0045793 P positive regulation of cell size
GO:0051262 P protein tetramerization
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0090102 P cochlea development
GO:0097066 P response to thyroid hormone
GO:0098656 P anion transmembrane transport
GO:1902074 P response to salt
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
GO:2000147 P positive regulation of cell motility
FPKM:3.36 TPM:3.38
685 A_BomoSK_comp10341_c0_seq1
1362bp
 PREDICTED:_protein_rolling_stone-like_isoform_X3_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0007275 P multicellular organism development
GO:0007519 P skeletal muscle tissue development
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:8.04 TPM:8.09
686 A_BomoSK_comp10342_c0_seq1
2296bp
 high_temperature_requirement_protein_A2_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006508 P proteolysis
GO:0006915 P apoptotic process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031966 C mitochondrial membrane
FPKM:5.41 TPM:5.44
687 A_BomoSK_comp103442_c0_seq1
206bp
FPKM:0.00 TPM:0.00
688 A_BomoSK_comp103442_c0_seq2
205bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101738244_[Bombyx_mori]
FPKM:10.88 TPM:10.95
689 A_BomoSK_comp10344_c0_seq1
936bp
 Nep1_protein_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0009267 P cellular response to starvation
GO:0016740 F transferase activity
GO:0019843 F rRNA binding
GO:0022008 P neurogenesis
GO:0031167 P rRNA methylation
GO:0032040 C small-subunit processome
GO:0032259 P methylation
GO:0040018 P positive regulation of multicellular organism growth
GO:0042254 P ribosome biogenesis
GO:0042742 P defense response to bacterium
GO:0070037 F rRNA (pseudouridine) methyltransferase activity
GO:0070475 P rRNA base methylation
FPKM:7.96 TPM:8.01
690 A_BomoSK_comp10345_c0_seq1
274bp
 hypothetical_protein_KGM_03315_[Danaus_plexippus]
FPKM:13.86 TPM:13.94
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