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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
691 A_BomoSK_comp10346_c0_seq1
1197bp
FPKM:5.35 TPM:5.38
692 A_BomoSK_comp10347_c0_seq1
3839bp
 PREDICTED:_jmjC_domain-containing_histone_demethylation_protein_1_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
FPKM:4.56 TPM:4.59
693 A_BomoSK_comp10348_c0_seq1
2085bp
 PREDICTED:_mitogen-activated_protein_kinase_kinase_kinase_11-like_[Papilio_polytes]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0008219 P cell death
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043065 P positive regulation of apoptotic process
GO:0046777 P protein autophosphorylation
FPKM:6.31 TPM:6.34
694 A_BomoSK_comp10349_c0_seq1
1861bp
 PREDICTED:_coiled-coil_domain-containing_protein_174_[Bombyx_mori]
GO:0005654 C nucleoplasm
FPKM:6.36 TPM:6.40
695 A_BomoSK_comp10349_c0_seq2
840bp
 PREDICTED:_coiled-coil_domain-containing_protein_174_[Bombyx_mori]
FPKM:1.00 TPM:1.00
696 A_BomoSK_comp10350_c0_seq1
352bp
FPKM:1.37 TPM:1.38
697 A_BomoSK_comp10350_c1_seq1
448bp
FPKM:1.95 TPM:1.96
698 A_BomoSK_comp1035196_c0_seq1
210bp
 netrin_receptor_dcc_[Ascaris_suum]
FPKM:3.25 TPM:3.27
699 A_BomoSK_comp10351_c0_seq1
1680bp
 PREDICTED:_probable_tRNA_(guanine(26)-N(2))-dimethyltransferase_isoform_X1_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0002940 P tRNA N2-guanine methylation
GO:0003723 F RNA binding
GO:0004809 F tRNA (guanine-N2-)-methyltransferase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:0.00 TPM:0.00
700 A_BomoSK_comp10351_c0_seq2
1663bp
 PREDICTED:_probable_tRNA_(guanine(26)-N(2))-dimethyltransferase_isoform_X1_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0002940 P tRNA N2-guanine methylation
GO:0003723 F RNA binding
GO:0004809 F tRNA (guanine-N2-)-methyltransferase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:0.97 TPM:0.97
701 A_BomoSK_comp10351_c0_seq3
1691bp
 PREDICTED:_probable_tRNA_(guanine(26)-N(2))-dimethyltransferase_isoform_X1_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0002940 P tRNA N2-guanine methylation
GO:0003723 F RNA binding
GO:0004809 F tRNA (guanine-N2-)-methyltransferase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:0.78 TPM:0.78
702 A_BomoSK_comp10351_c0_seq4
1674bp
 PREDICTED:_probable_tRNA_(guanine(26)-N(2))-dimethyltransferase_isoform_X1_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0002940 P tRNA N2-guanine methylation
GO:0003723 F RNA binding
GO:0004809 F tRNA (guanine-N2-)-methyltransferase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:5.09 TPM:5.12
703 A_BomoSK_comp103525_c0_seq1
657bp
FPKM:4.80 TPM:4.82
704 A_BomoSK_comp10352_c0_seq1
1846bp
 PREDICTED:_phosducin-like_protein_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008479 F queuine tRNA-ribosyltransferase activity
GO:0008616 P queuosine biosynthetic process
FPKM:4.91 TPM:4.94
705 A_BomoSK_comp10353_c0_seq1
476bp
 PREDICTED:_uncharacterized_protein_LOC106132264_[Amyelois_transitella]
FPKM:8.01 TPM:8.06
706 A_BomoSK_comp10354_c0_seq1
1410bp
 PREDICTED:_sister_chromatid_cohesion_protein_DCC1_[Amyelois_transitella]
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0007049 P cell cycle
GO:0031390 C Ctf18 RFC-like complex
GO:0034088 P maintenance of mitotic sister chromatid cohesion
GO:0034421 P post-translational protein acetylation
GO:0043142 F single-stranded DNA helicase activity
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
FPKM:6.80 TPM:6.84
707 A_BomoSK_comp10354_c0_seq2
1618bp
 PREDICTED:_sister_chromatid_cohesion_protein_DCC1_[Amyelois_transitella]
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0007049 P cell cycle
GO:0031390 C Ctf18 RFC-like complex
GO:0034088 P maintenance of mitotic sister chromatid cohesion
GO:0034421 P post-translational protein acetylation
GO:0043142 F single-stranded DNA helicase activity
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
FPKM:0.91 TPM:0.92
708 A_BomoSK_comp10355_c0_seq1
964bp
 PREDICTED:_shootin-1-like_isoform_X2_[Bombyx_mori]
FPKM:4.61 TPM:4.63
709 A_BomoSK_comp10355_c0_seq2
251bp
FPKM:3.20 TPM:3.22
710 A_BomoSK_comp10355_c0_seq3
1095bp
 PREDICTED:_shootin-1-like_isoform_X2_[Bombyx_mori]
FPKM:2.51 TPM:2.52
711 A_BomoSK_comp10356_c0_seq1
731bp
FPKM:0.00 TPM:0.00
712 A_BomoSK_comp10356_c0_seq2
715bp
FPKM:2.24 TPM:2.25
713 A_BomoSK_comp103571_c0_seq1
550bp
FPKM:6.68 TPM:6.72
714 A_BomoSK_comp10357_c0_seq1
386bp
FPKM:0.85 TPM:0.86
715 A_BomoSK_comp10358_c0_seq1
446bp
FPKM:1.53 TPM:1.54
716 A_BomoSK_comp10358_c1_seq1
787bp
FPKM:5.35 TPM:5.38
717 A_BomoSK_comp103597_c0_seq1
709bp
FPKM:4.32 TPM:4.34
718 A_BomoSK_comp1035985_c0_seq1
217bp
FPKM:1.41 TPM:1.42
719 A_BomoSK_comp10359_c0_seq1
1615bp
 PREDICTED:_TIMELESS-interacting_protein_[Bombyx_mori]
GO:0000076 P DNA replication checkpoint signaling
GO:0000790 C chromatin
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0044770 P cell cycle phase transition
GO:0048478 P replication fork protection
GO:0051301 P cell division
FPKM:5.43 TPM:5.46
720 A_BomoSK_comp10361_c0_seq1
481bp
FPKM:1.15 TPM:1.16
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