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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
601 A_BomoSK_comp102979_c0_seq1
334bp
 PREDICTED:_protein_VAC14_homolog_isoform_X4_[Bombyx_mori]
FPKM:4.21 TPM:4.24
602 A_BomoSK_comp10297_c0_seq1
3279bp
 PREDICTED:_zinc_finger_protein_rotund_isoform_X3_[Papilio_polytes]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001708 P cell fate specification
GO:0003676 F nucleic acid binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0019233 P sensory perception of pain
GO:0022416 P chaeta development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
FPKM:5.96 TPM:5.99
603 A_BomoSK_comp10297_c1_seq1
873bp
FPKM:6.56 TPM:6.60
604 A_BomoSK_comp10298_c0_seq1
392bp
 olfactory_receptor_[Bombyx_mori]
FPKM:1.10 TPM:1.11
605 A_BomoSK_comp10298_c0_seq2
376bp
FPKM:1.20 TPM:1.20
606 A_BomoSK_comp10299_c0_seq1
1642bp
 PREDICTED:_ADAM_17-like_protease_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0006508 P proteolysis
GO:0006509 P membrane protein ectodomain proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:2.36 TPM:2.37
607 A_BomoSK_comp1029_c0_seq1
232bp
FPKM:0.00 TPM:0.00
608 A_BomoSK_comp102_c0_seq1
647bp
FPKM:0.74 TPM:0.74
609 A_BomoSK_comp103000_c0_seq1
680bp
FPKM:2.63 TPM:2.64
610 A_BomoSK_comp10300_c0_seq1
761bp
 Tropomodulin_[Operophtera_brumata]
FPKM:2.55 TPM:2.57
611 A_BomoSK_comp10301_c0_seq1
3200bp
 PREDICTED:_ken_and_barbie_protein_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0030539 P male genitalia development
GO:0030540 P female genitalia development
GO:0045496 P male analia development
GO:0045497 P female analia development
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0046872 F metal ion binding
FPKM:2.60 TPM:2.61
612 A_BomoSK_comp10301_c0_seq2
3089bp
 PREDICTED:_ken_and_barbie_protein_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0030539 P male genitalia development
GO:0030540 P female genitalia development
GO:0045496 P male analia development
GO:0045497 P female analia development
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0046872 F metal ion binding
FPKM:2.65 TPM:2.66
613 A_BomoSK_comp10301_c1_seq1
467bp
FPKM:1.41 TPM:1.42
614 A_BomoSK_comp10302_c0_seq1
353bp
FPKM:0.00 TPM:0.00
615 A_BomoSK_comp10302_c0_seq2
354bp
 hypothetical_protein_RP20_CCG005148_[Aedes_albopictus]
FPKM:0.68 TPM:0.68
616 A_BomoSK_comp10303_c0_seq1
322bp
 hypothetical_protein_[Pleurocapsa_sp._PCC_7319]
FPKM:1.25 TPM:1.26
617 A_BomoSK_comp10304_c0_seq1
730bp
 PREDICTED:_pre-mRNA-processing_factor_39_isoform_X1_[Amyelois_transitella]
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
FPKM:8.51 TPM:8.55
618 A_BomoSK_comp10305_c0_seq1
2120bp
 putative_zinc_finger_protein_84_[Danaus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.69 TPM:3.71
619 A_BomoSK_comp10306_c0_seq1
1373bp
 PREDICTED:_dual_specificity_protein_phosphatase_Mpk3_isoform_X1_[Papilio_xuthus]
GO:0000188 P obsolete inactivation of MAPK activity
GO:0002385 P mucosal immune response
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0007428 P primary branching, open tracheal system
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016311 P dephosphorylation
GO:0016337 P cell-cell adhesion
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0017017 F MAP kinase tyrosine/serine/threonine phosphatase activity
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0042127 P regulation of cell population proliferation
GO:0043409 P negative regulation of MAPK cascade
FPKM:5.45 TPM:5.48
620 A_BomoSK_comp10307_c0_seq1
2136bp
 AF173553_1_V-ATPase_110_kDa_integral_membrane_subunit_[Manduca_sexta]
GO:0000220 C vacuolar proton-transporting V-type ATPase, V0 domain
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007035 P vacuolar acidification
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016471 C vacuolar proton-transporting V-type ATPase complex
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0033179 C proton-transporting V-type ATPase, V0 domain
GO:0042470 C melanosome
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
GO:0051117 F ATPase binding
GO:0070072 P vacuolar proton-transporting V-type ATPase complex assembly
FPKM:5.07 TPM:5.10
621 A_BomoSK_comp10308_c0_seq1
526bp
FPKM:4.83 TPM:4.85
622 A_BomoSK_comp103095_c0_seq1
648bp
 PREDICTED:_protein_IWS1_homolog_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0090239 P regulation of histone H4 acetylation
GO:2001253 P regulation of histone H3-K36 trimethylation
FPKM:5.38 TPM:5.41
623 A_BomoSK_comp10309_c0_seq1
2739bp
 hypothetical_protein_KGM_00713_[Danaus_plexippus]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:6.80 TPM:6.84
624 A_BomoSK_comp10309_c1_seq1
705bp
FPKM:2.94 TPM:2.95
625 A_BomoSK_comp10310_c0_seq1
1357bp
FPKM:6.05 TPM:6.09
626 A_BomoSK_comp10310_c0_seq2
1689bp
FPKM:5.43 TPM:5.46
627 A_BomoSK_comp10311_c0_seq1
2911bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_3_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:2000036 P regulation of stem cell population maintenance
FPKM:1.97 TPM:1.99
628 A_BomoSK_comp10311_c0_seq2
1699bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_3_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:2000036 P regulation of stem cell population maintenance
FPKM:0.00 TPM:0.00
629 A_BomoSK_comp10311_c0_seq3
4163bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_3_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:2000036 P regulation of stem cell population maintenance
FPKM:4.11 TPM:4.14
630 A_BomoSK_comp10311_c0_seq4
2951bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_3_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:2000036 P regulation of stem cell population maintenance
FPKM:0.00 TPM:0.00
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