SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp10304_c0_seq1
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:8.51 TPM:8.55
ORF EntryO_BomoSK7022_internal:A_BomoSK_comp10304_c0_seq1
Sequence
(Nucleotide)
GGCGCGGGCGGCGGCGGGCTGGCGGCGCACGTGCTGCAGGAACCGCGCGTACTTGATGGC
GAGCGCAGACGCCAGCGACTTGTTCTTCGAAGTGCTGATGTACGTTTCGTATAGCTGAGA
GCACTTCTCGTAGTCGCCGCGTCGTCGCTCGAGGTTCACTCGCCTGTACTGTATTTGTAC
GAGATTGGGACAGGTTTTCTCTATACGATCAAGTATCTCGGCAGCTTTCAGTGTATTGCC
CTGCACCTCTTCGAAGTGTGCCCAGTGTAGGTGGAGCTCTGGCTTGTCGAGGTGATGCAC
TGTGCAGGCTCGCTCTAGTACTTCCCGTTCTATTGCTATCACTTCAGGATCTTGTTCAGC
ACGTTCTTCCAGAAACTTTATAAGCTTCATCCAGAATTCTTCATATAAGGCACATGCAAT
GAGGCATCTCTCGTGGAGCACGAGGGCTCGCTTGAACGAACCGTGGTGCTTCTCCCATTC
GAGGTACGCCTTCCAGTTCTTTAGCTGGCAACGTTCCAGGGGCTTCACGTGGAAATAAGG
CCGCTTGATTCCTTCTTCGAAAGTCCACCTCGCAGTTACTTCTTCGCCGGTCGTTTTATG
AATTTTTCTTCGAGCTGCAACAATCCGTTCCTTGATGGCTTGCGCCTCTTCATCGGATGC
GACATGGTCGACGGGCTCGTCCTCCCCGGGCGGCAGGTCGAGGCTGGGCTGCGCGCCGGC
CGCGTCCCGC
(730 bp)

- SilkBase 1999-2023 -