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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp10311_c0_seq1
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_3_isoform_X1_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:2000036 P regulation of stem cell population maintenance
Transcript
Level		FPKM:1.97 TPM:1.99
ORF EntryO_BomoSK7039_complete:A_BomoSK_comp10311_c0_seq1
Sequence
(Nucleotide)
CAGAATTTATGACCTGACTAGGTACAAGCGAGAATAGCACTCGATAATATTTTGATAAGT
GTAAACAAACATTATGTTGTCGTTTGAAAAGAGTGTAGTAAAACTCCTTGTCTATGACGA
GTCAGAAGCTATACATATATCAAAGTTCGACCTTGTTTTATCGTAGTAAACATGTTCACG
ACCAGCCTGGTATTAGAATGGTATCCAGAACACGCAGACATCATAACATGAAAGCCTGCA
CTGTGAGGCATGAGGAAAAGTCTTCAATTACATTGAATTACATTGTCCCGGCTTTGTAGC
AGAAATTGGCAGAGTGGTGGAAACCTCTCCACGGCGGATCACAAAACGCCCCGCCACCGA
TAATAACTTAATCTCATCTTGTATTCGAGAAACTCATCTGGTATAAATCGAGCCTAATTT
TGAAATTTTCCAATATTTACAAAACATATGTCTGCCGTTTTTTCAAATATAAAAATCGCC
TATATTTATATATATATATTGGATTACCTAATCGCACGTAGACAAAAACAATTACAGATT
ATGCTTTATCATTCATTATGAAATTTTAGATTCGTAACAAGTCTAAGTGAAGCACACGTC
GCAGCGCTTAAAACCAAAATTTAACGTCTAAAGCAGAAGTTATAAAAACGTCTCGGAACA
AACTCGGAGCGTGTAATTCACTAAACACGAGATCACACATGGAATACTAAAAATACAGAT
CTATAGTATTGTGGTGGTTGTGTTCAATTATTAATTTGTATTATAAAACTAATGAAAACA
TCGTGTCAACAACTTAAGTATCGATAGTGTATGTGAGAAATCGATATTCGTTAATCATCC
GCGATTATCGATTATTTATAGTTCTTTGAGTGACAGACAGTGCGAAGGTATTTGTCACTC
AAAGACCTCATTGTATATTAGGAAAAAAGTCTATTATATTCATCAACGCTTTTGCAAACT
GTACAATTCTATAAATTGATTCGAAAGAAACTATTGGATAAGTTCGTATATCGGAATTCA
GACTAGGCAATTACAACATTCTAAACTATTAAATTGTCAACATCGAACCTCTTATAGCTA
CGCACGCAACGCCTTTCACACATTCACAATTTATCTAACAGTAGTCCAAGAATGTTCCGA
GCTTATAACAATATCACATTAGTTCTTAACGACCGCGCACGGCTGACTAAATATACTGCA
TCACATGATATCTTTCGCTTTTTTGTTCAATTATTTAAAAAAAAAAAACAACAACAACAC
TACATCACTGACTGCCAGAAAGCTGTTTATACAAAAGATTTCTTCATGATTAACAAAAAA
AATCTCGTGTCCGAACATTTAAATCGATAATAGAATCGAGCCGTTTAAGTATTACATCGA
TATAAAACTATCGATAGCATCACTAGTCCCGGTCGACGCTATTATCGTGGATCATAATGT
AGTAGTAACTTCAGGTTCCCTCGCGTTGACATCGCGATCCGTTTCCATCGTCTCGATGCG
ACGTTCATTAAAACATCTTTCCCGTAAAACCATCGTCATAACATTGTCTCTATATAAATA
CCAGTCCATGAAATTTATTTCAGGTACATGTTTTTTATTATTAGCTTACGTTGACAAACG
GCGGAACCGCGGTCTGACAAACGTGAGCGCTCGTGAACACGTCACGTACACACGAGTTCC
AACCTGTGAGCATTCCGGTGCGTGCTCAATTTCGAATGACACGGCTGGCTTCCCGTATGC
ACATACAGAAAAAACGGTGCGAGTTGTTTTATCATAAGTATTTTTTGGTAATTACAACTA
AAAATTTCCTAAATATAGGAATGTCGTGTATAGTTATCGAGTGGTCTGCGCGCAGGTGGT
GTGTAGTAGACGCGAGTGCGGACGGCGGTTCGGTGACGCAGGTTCAATTCAAGTCTCGGT
CCTCTAAGTACTTGTACTCGAACGTGAAGCCCTCCTTTTTGCGCTGGCCCCACTTCTCGT
AGTCGAAATAGATGTATGTGCCCTGTTCATATTCCTCGTTGATGACTTTTGGTTCCTCGT
GCCTCTGGAACCACATCATGTATTTAGTATGGAAGCGCCAGCTTTGTTTTTTGAGCGCTT
TCGCTGCGAGGTACTGCGCTTTCGTTCCCTCCATGTAGTAGAACACGAAGAACAACGTCT
CCGTCGACAACCGCTGGAAGAACTCTACCGTGTCCGAATGGGGTAATAACACCTGATTGT
AATATTCAGGAGTCCGACAAATGTTCCTAGGCAAGTAGACCCTTGTACGTTCCGAGTCTG
AAGGGTGGGGCATGTGATAGAACGCTGACTCCATCATCTGGAACTGTACTTGATGGCCCG
AGTCAAGTGGCTGCGGTCCTAAGGGCGCGACTCCTAATAGTGGCGGAATGTGCGCTTGCG
CTATTGCCGTACTCCGTCTCGTGTTCTGGTGGTGCAGGTCCAGACCGGCGCGGTGCACGG
CCTCCTGCGCCATGCTCTTGAGCGAGGCGGTGTTGTGCGCCGCACTGCTCGCGCTCGTGG
CACTCGACGCGCTCACCGCCGACATGCTCGACGTCTCGCTCACTCGTCCATTGTTGAGCG
CGTGGTGCGGCGTGTGATGCGCGGAGGGAGGGGGGCCGTTGACGGTGAGGGGGGACGTCG
TCACGCTCGCGCTGGCGCCGCCACTCGACGATGTACTCCGCGACGTTGGGGGCGGTTGCT
GCGTGGGGGGAGGCGGTAGATGCGTCGTCGTCGTGTTGACCGCTGCTGTGATTGATACTG
GACCATTCTCGACTACTTCATCGTCCATATTCAGTGGTCGTTTACGCGGGAAATCATTTT
GCGATTGTTTTATTTTTCGTTTCGTTCCGAGGCAAGCGCCTCGTTCCACGCAGCCTGGCG
ACTGGCGTGTGAAACCTAGAGATAGCCTTTA
(2911 bp)

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