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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
571 A_BomoSK_comp10276_c0_seq1
648bp
FPKM:6.72 TPM:6.76
572 A_BomoSK_comp10277_c0_seq1
1388bp
 mitochondrial_matrix_protein_p33_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001849 F complement component C1q complex binding
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0003714 F transcription corepressor activity
GO:0003729 F mRNA binding
GO:0005540 F hyaluronic acid binding
GO:0005576 C extracellular region
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006958 P complement activation, classical pathway
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0014065 P phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0030449 P regulation of complement activation
GO:0030984 F kininogen binding
GO:0031690 F adrenergic receptor binding
GO:0032689 P negative regulation of interferon-gamma production
GO:0032695 P negative regulation of interleukin-12 production
GO:0039534 P negative regulation of MDA-5 signaling pathway
GO:0039536 P negative regulation of RIG-I signaling pathway
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0043065 P positive regulation of apoptotic process
GO:0045087 P innate immune response
GO:0045785 P positive regulation of cell adhesion
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0050687 P negative regulation of defense response to virus
GO:0051897 P positive regulation of protein kinase B signaling
GO:0070131 P positive regulation of mitochondrial translation
GO:0090023 P positive regulation of neutrophil chemotaxis
GO:0097177 F mitochondrial ribosome binding
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1901165 P positive regulation of trophoblast cell migration
GO:2000510 P positive regulation of dendritic cell chemotaxis
FPKM:1.99 TPM:2.00
573 A_BomoSK_comp10277_c0_seq2
574bp
 mitochondrial_matrix_protein_p33_[Bombyx_mori]
FPKM:0.31 TPM:0.31
574 A_BomoSK_comp10277_c0_seq3
1346bp
 PREDICTED:_mitochondrial_matrix_protein_p33_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001849 F complement component C1q complex binding
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0003714 F transcription corepressor activity
GO:0003729 F mRNA binding
GO:0005540 F hyaluronic acid binding
GO:0005576 C extracellular region
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006958 P complement activation, classical pathway
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0014065 P phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0030449 P regulation of complement activation
GO:0030984 F kininogen binding
GO:0031690 F adrenergic receptor binding
GO:0032689 P negative regulation of interferon-gamma production
GO:0032695 P negative regulation of interleukin-12 production
GO:0039534 P negative regulation of MDA-5 signaling pathway
GO:0039536 P negative regulation of RIG-I signaling pathway
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0043065 P positive regulation of apoptotic process
GO:0045087 P innate immune response
GO:0045785 P positive regulation of cell adhesion
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0050687 P negative regulation of defense response to virus
GO:0051897 P positive regulation of protein kinase B signaling
GO:0070131 P positive regulation of mitochondrial translation
GO:0090023 P positive regulation of neutrophil chemotaxis
GO:0097177 F mitochondrial ribosome binding
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1901165 P positive regulation of trophoblast cell migration
GO:2000510 P positive regulation of dendritic cell chemotaxis
FPKM:20.78 TPM:20.90
575 A_BomoSK_comp1027859_c0_seq1
219bp
 bifunctional_riboflavin_kinase/FMN_adenylyltransferase_[Bacillus_sp._B-jedd]
FPKM:1.36 TPM:1.36
576 A_BomoSK_comp10279_c0_seq1
423bp
 ABC_transporter_[Leptolyngbya_sp._KIOST-1]
FPKM:8.86 TPM:8.91
577 A_BomoSK_comp1027_c0_seq1
430bp
FPKM:2.32 TPM:2.34
578 A_BomoSK_comp102800_c0_seq1
1620bp
 PREDICTED:_glucose-dependent_insulinotropic_receptor-like_isoform_X1_[Papilio_machaon]
GO:0001306 P age-dependent response to oxidative stress
GO:0001588 F dopamine neurotransmitter receptor activity, coupled via Gs
GO:0001963 P synaptic transmission, dopaminergic
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0004935 F adrenergic receptor activity
GO:0004952 F dopamine neurotransmitter receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007191 P adenylate cyclase-activating dopamine receptor signaling pathway
GO:0007212 P dopamine receptor signaling pathway
GO:0007612 P learning
GO:0008226 F tyramine receptor activity
GO:0008227 F G protein-coupled amine receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030285 C integral component of synaptic vesicle membrane
GO:0035240 F dopamine binding
GO:0060158 P phospholipase C-activating dopamine receptor signaling pathway
GO:0071875 P adrenergic receptor signaling pathway
GO:0099509 P regulation of presynaptic cytosolic calcium ion concentration
GO:1903223 P positive regulation of oxidative stress-induced neuron death
GO:1990834 P response to odorant
FPKM:4.59 TPM:4.62
579 A_BomoSK_comp10280_c0_seq1
2638bp
 PREDICTED:_zinc_finger_MIZ_domain-containing_protein_1_[Bombyx_mori]
GO:0001570 P vasculogenesis
GO:0001701 P in utero embryonic development
GO:0003007 P heart morphogenesis
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007296 P vitellogenesis
GO:0007569 P cell aging
GO:0008270 F zinc ion binding
GO:0016607 C nuclear speck
GO:0043231 C intracellular membrane-bounded organelle
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048146 P positive regulation of fibroblast proliferation
GO:0048589 P developmental growth
GO:0048844 P artery morphogenesis
FPKM:6.05 TPM:6.09
580 A_BomoSK_comp10281_c0_seq1
1091bp
 hypothetical_protein_RR46_03794_[Papilio_xuthus]
FPKM:2.78 TPM:2.80
581 A_BomoSK_comp10282_c0_seq1
2135bp
 PREDICTED:_U11/U12_small_nuclear_ribonucleoprotein_35_kDa_protein-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005689 C U12-type spliceosomal complex
GO:0017069 F snRNA binding
GO:0071011 C precatalytic spliceosome
FPKM:3.58 TPM:3.60
582 A_BomoSK_comp10283_c0_seq1
3779bp
 PREDICTED:_nuclear_receptor_coactivator_6-like_[Bombyx_mori]
FPKM:4.31 TPM:4.33
583 A_BomoSK_comp10284_c0_seq1
1584bp
 PREDICTED:_probable_polyamine_oxidase_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006598 P polyamine catabolic process
GO:0016491 F oxidoreductase activity
GO:0046208 P spermine catabolic process
GO:0046592 F polyamine oxidase activity
GO:0052894 F norspermine:oxygen oxidoreductase activity
GO:0052895 F N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity
GO:0052901 F spermine:oxygen oxidoreductase (spermidine-forming) activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:5.67 TPM:5.71
584 A_BomoSK_comp10285_c0_seq1
1995bp
 PREDICTED:_N6-adenosine-methyltransferase_70_kDa_subunit_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006382 P adenosine to inosine editing
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008168 F methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0010467 P gene expression
GO:0016422 F mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0019827 P stem cell population maintenance
GO:0031053 P primary miRNA processing
GO:0032259 P methylation
GO:0036396 C RNA N6-methyladenosine methyltransferase complex
GO:0048511 P rhythmic process
GO:0061157 P mRNA destabilization
GO:0080009 P mRNA methylation
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990744 P primary miRNA methylation
FPKM:3.85 TPM:3.88
585 A_BomoSK_comp10286_c0_seq1
266bp
FPKM:1.00 TPM:1.00
586 A_BomoSK_comp10286_c0_seq2
375bp
FPKM:3.47 TPM:3.49
587 A_BomoSK_comp10286_c0_seq3
344bp
FPKM:0.00 TPM:0.00
588 A_BomoSK_comp10287_c0_seq1
3020bp
 PREDICTED:_leucine-rich_repeat-containing_protein_24-like_[Amyelois_transitella]
GO:0005518 F collagen binding
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0007409 P axonogenesis
GO:0007596 P blood coagulation
GO:0007599 P hemostasis
GO:0009986 C cell surface
GO:0010544 P negative regulation of platelet activation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
FPKM:4.80 TPM:4.83
589 A_BomoSK_comp10288_c0_seq1
1388bp
FPKM:6.64 TPM:6.68
590 A_BomoSK_comp1028_c0_seq1
682bp
 uncharacterized_protein_LOC101739895_[Bombyx_mori]
FPKM:1.02 TPM:1.03
591 A_BomoSK_comp1029057_c0_seq1
253bp
 hypothetical_protein,_conserved_[Eimeria_necatrix]
FPKM:1.60 TPM:1.61
592 A_BomoSK_comp10290_c0_seq1
1911bp
 PREDICTED:_enhancer_of_mRNA-decapping_protein_4-like,_partial_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
FPKM:6.00 TPM:6.03
593 A_BomoSK_comp10292_c0_seq1
673bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_helicase_domino_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004386 F helicase activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0048471 C perinuclear region of cytoplasm
FPKM:5.56 TPM:5.60
594 A_BomoSK_comp10293_c0_seq1
463bp
 PREDICTED:_uncharacterized_protein_LOC106134232_[Amyelois_transitella]
FPKM:4.09 TPM:4.12
595 A_BomoSK_comp10294_c0_seq1
1966bp
 PREDICTED:_E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035264 P multicellular organism growth
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0061053 P somite development
GO:0061630 F ubiquitin protein ligase activity
FPKM:3.30 TPM:3.32
596 A_BomoSK_comp10294_c0_seq2
1786bp
 PREDICTED:_E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0003676 F nucleic acid binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006260 P DNA replication
GO:0006275 P regulation of DNA replication
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035264 P multicellular organism growth
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0061053 P somite development
GO:0061630 F ubiquitin protein ligase activity
FPKM:2.59 TPM:2.61
597 A_BomoSK_comp10294_c0_seq3
561bp
 PREDICTED:_E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
FPKM:1.80 TPM:1.81
598 A_BomoSK_comp10295_c0_seq1
1215bp
 PREDICTED:_DNA-directed_RNA_polymerases_I_and_III_subunit_RPAC1_isoform_X1_[Papilio_machaon]
GO:0000183 P rDNA heterochromatin assembly
GO:0001054 F RNA polymerase I activity
GO:0001056 F RNA polymerase III activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005666 C RNA polymerase III complex
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006383 P transcription by RNA polymerase III
GO:0008150 P biological_process
GO:0034587 P piRNA metabolic process
GO:0046983 F protein dimerization activity
FPKM:6.18 TPM:6.22
599 A_BomoSK_comp10296_c0_seq1
202bp
 PREDICTED:_importin_subunit_alpha-1-like_[Plutella_xylostella]
FPKM:3.89 TPM:3.91
600 A_BomoSK_comp10296_c0_seq2
2175bp
 PREDICTED:_importin_subunit_alpha-5-like_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0042826 F histone deacetylase binding
GO:0044822 F RNA binding
FPKM:4.83 TPM:4.86
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