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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
271 A_BomoFB_comp10062_c0_seq3
3532bp
 PREDICTED:_heat_shock_factor-d_isoform_X5_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:0.74 TPM:0.81
272 A_BomoFB_comp10062_c0_seq4
5129bp
 PREDICTED:_heat_shock_factor-d_isoform_X4_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:0.00 TPM:0.00
273 A_BomoFB_comp10062_c0_seq5
2049bp
 heat_shock_factor-d_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:1.60 TPM:1.75
274 A_BomoFB_comp10062_c0_seq6
5582bp
 PREDICTED:_heat_shock_factor-d_isoform_X1_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:3.00 TPM:3.29
275 A_BomoFB_comp10062_c0_seq7
3601bp
 PREDICTED:_heat_shock_factor-d_isoform_X3_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:0.51 TPM:0.56
276 A_BomoFB_comp10062_c0_seq8
5513bp
 PREDICTED:_heat_shock_factor-d_isoform_X5_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:0.56 TPM:0.62
277 A_BomoFB_comp10062_c0_seq9
1980bp
 PREDICTED:_heat_shock_factor-d_isoform_X5_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:2.15 TPM:2.36
278 A_BomoFB_comp1006310_c0_seq1
266bp
FPKM:1.26 TPM:1.39
279 A_BomoFB_comp10063_c1_seq1
274bp
 type_II_secretion_system_protein_E_[Ferriphaselus_amnicola]
FPKM:2.91 TPM:3.19
280 A_BomoFB_comp10063_c2_seq1
251bp
FPKM:15.08 TPM:16.52
281 A_BomoFB_comp100641_c0_seq1
1207bp
FPKM:2.60 TPM:2.85
282 A_BomoFB_comp10064_c0_seq1
2025bp
 PREDICTED:_A-kinase_anchor_protein_1,_mitochondrial_isoform_X2_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005811 C lipid droplet
GO:0008017 F microtubule binding
GO:0010614 P negative regulation of cardiac muscle hypertrophy
GO:0010738 P regulation of protein kinase A signaling
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019901 F protein kinase binding
GO:0019903 F protein phosphatase binding
GO:0019904 F protein domain specific binding
GO:0030061 C mitochondrial crista
GO:0030346 F protein phosphatase 2B binding
GO:0031594 C neuromuscular junction
GO:0032947 F molecular adaptor activity
GO:0034237 F protein kinase A regulatory subunit binding
GO:0035308 P negative regulation of protein dephosphorylation
GO:0045211 C postsynaptic membrane
GO:0048487 F beta-tubulin binding
GO:0051534 P negative regulation of calcineurin-NFAT signaling cascade
GO:0071320 P cellular response to cAMP
GO:0071375 P cellular response to peptide hormone stimulus
FPKM:10.52 TPM:11.53
283 A_BomoFB_comp10064_c0_seq2
2390bp
 PREDICTED:_A-kinase_anchor_protein_1,_mitochondrial_isoform_X2_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005811 C lipid droplet
GO:0008017 F microtubule binding
GO:0010614 P negative regulation of cardiac muscle hypertrophy
GO:0010738 P regulation of protein kinase A signaling
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019901 F protein kinase binding
GO:0019903 F protein phosphatase binding
GO:0019904 F protein domain specific binding
GO:0030061 C mitochondrial crista
GO:0030346 F protein phosphatase 2B binding
GO:0031594 C neuromuscular junction
GO:0032947 F molecular adaptor activity
GO:0034237 F protein kinase A regulatory subunit binding
GO:0035308 P negative regulation of protein dephosphorylation
GO:0045211 C postsynaptic membrane
GO:0048487 F beta-tubulin binding
GO:0051534 P negative regulation of calcineurin-NFAT signaling cascade
GO:0071320 P cellular response to cAMP
GO:0071375 P cellular response to peptide hormone stimulus
FPKM:1.58 TPM:1.73
284 A_BomoFB_comp10064_c1_seq1
1641bp
FPKM:6.93 TPM:7.59
285 A_BomoFB_comp10064_c2_seq1
6704bp
 PREDICTED:_eukaryotic_translation_initiation_factor_4_gamma_3-like_[Bombyx_mori]
GO:0001934 P positive regulation of protein phosphorylation
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0007283 P spermatogenesis
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0060903 P positive regulation of meiosis I
FPKM:16.08 TPM:17.62
286 A_BomoFB_comp10064_c2_seq2
5805bp
 PREDICTED:_eukaryotic_translation_initiation_factor_4_gamma_3-like_[Bombyx_mori]
GO:0001934 P positive regulation of protein phosphorylation
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0007283 P spermatogenesis
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0060903 P positive regulation of meiosis I
FPKM:19.78 TPM:21.67
287 A_BomoFB_comp10065_c0_seq1
4048bp
 Host_cell_factor_1_[Papilio_xuthus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000123 C histone acetyltransferase complex
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0010628 P positive regulation of gene expression
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0019046 P release from viral latency
GO:0030424 C axon
GO:0030425 C dendrite
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0043254 P regulation of protein-containing complex assembly
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0045787 P positive regulation of cell cycle
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
GO:0048188 C Set1C/COMPASS complex
GO:0050821 P protein stabilization
GO:0070461 C SAGA-type complex
GO:0070688 C obsolete MLL5-L complex
GO:0071339 C MLL1 complex
GO:0071407 P cellular response to organic cyclic compound
FPKM:10.66 TPM:11.68
288 A_BomoFB_comp1006612_c0_seq1
205bp
FPKM:1.62 TPM:1.78
289 A_BomoFB_comp10066_c0_seq1
3282bp
 PREDICTED:_hypoxia-inducible_factor_1-alpha-like_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001666 P response to hypoxia
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016607 C nuclear speck
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
FPKM:0.00 TPM:0.00
290 A_BomoFB_comp10066_c0_seq2
3452bp
 PREDICTED:_hypoxia-inducible_factor_1-alpha-like_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001666 P response to hypoxia
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016607 C nuclear speck
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
FPKM:0.00 TPM:0.00
291 A_BomoFB_comp10066_c0_seq3
2204bp
 PREDICTED:_hypoxia-inducible_factor_1-alpha-like_[Bombyx_mori]
FPKM:10.97 TPM:12.02
292 A_BomoFB_comp10066_c0_seq4
3808bp
 PREDICTED:_hypoxia-inducible_factor_1-alpha-like_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001666 P response to hypoxia
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016607 C nuclear speck
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
FPKM:12.96 TPM:14.20
293 A_BomoFB_comp10066_c0_seq5
3978bp
 PREDICTED:_hypoxia-inducible_factor_1-alpha-like_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001666 P response to hypoxia
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016607 C nuclear speck
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
FPKM:9.16 TPM:10.03
294 A_BomoFB_comp100672_c0_seq1
1561bp
 PREDICTED:_arf-GAP_with_coiled-coil,_ANK_repeat_and_PH_domain-containing_protein_2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005768 C endosome
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0036010 P protein localization to endosome
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:1990090 P cellular response to nerve growth factor stimulus
FPKM:2.92 TPM:3.19
295 A_BomoFB_comp10067_c0_seq1
2707bp
 PREDICTED:_maternal_protein_tudor-like_isoform_X1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007275 P multicellular organism development
GO:0007277 P pole cell development
GO:0007278 P pole cell fate determination
GO:0007281 P germ cell development
GO:0007315 P pole plasm assembly
GO:0008298 P intracellular mRNA localization
GO:0019090 P mitochondrial rRNA export from mitochondrion
GO:0030154 P cell differentiation
GO:0030719 P P granule organization
GO:0043186 C P granule
GO:0045495 C pole plasm
GO:0048477 P oogenesis
FPKM:0.38 TPM:0.42
296 A_BomoFB_comp10067_c0_seq2
7236bp
 PREDICTED:_maternal_protein_tudor_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007275 P multicellular organism development
GO:0007277 P pole cell development
GO:0007278 P pole cell fate determination
GO:0007281 P germ cell development
GO:0007315 P pole plasm assembly
GO:0008298 P intracellular mRNA localization
GO:0019090 P mitochondrial rRNA export from mitochondrion
GO:0030154 P cell differentiation
GO:0030719 P P granule organization
GO:0043186 C P granule
GO:0045495 C pole plasm
GO:0048477 P oogenesis
FPKM:0.00 TPM:0.00
297 A_BomoFB_comp10067_c0_seq3
7260bp
 PREDICTED:_maternal_protein_tudor_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007275 P multicellular organism development
GO:0007277 P pole cell development
GO:0007278 P pole cell fate determination
GO:0007281 P germ cell development
GO:0007315 P pole plasm assembly
GO:0008298 P intracellular mRNA localization
GO:0019090 P mitochondrial rRNA export from mitochondrion
GO:0030154 P cell differentiation
GO:0030719 P P granule organization
GO:0043186 C P granule
GO:0045495 C pole plasm
GO:0048477 P oogenesis
FPKM:5.59 TPM:6.12
298 A_BomoFB_comp1006821_c0_seq1
219bp
 olfactory_receptor_[Bombyx_mori]
FPKM:1.23 TPM:1.34
299 A_BomoFB_comp100685_c0_seq1
224bp
FPKM:5.61 TPM:6.15
300 A_BomoFB_comp100686_c0_seq1
1247bp
FPKM:2.60 TPM:2.85
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