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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
241 A_BomoFB_comp10055_c0_seq4
2374bp
 PREDICTED:_T-complex_protein_1_subunit_gamma_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0007052 P mitotic spindle organization
GO:0007430 P terminal branching, open tracheal system
GO:0042623 F ATP hydrolysis activity
GO:0051082 F unfolded protein binding
GO:0060439 P trachea morphogenesis
GO:0090307 P mitotic spindle assembly
FPKM:8.27 TPM:9.06
242 A_BomoFB_comp10055_c0_seq5
823bp
 PREDICTED:_uncharacterized_protein_LOC106600097,_partial_[Salmo_salar]
FPKM:2.12 TPM:2.32
243 A_BomoFB_comp10055_c0_seq6
206bp
 hypothetical_protein_RR46_11438_[Papilio_xuthus]
FPKM:3.18 TPM:3.48
244 A_BomoFB_comp10055_c0_seq7
391bp
 hypothetical_protein_RR46_11438_[Papilio_xuthus]
FPKM:4.03 TPM:4.41
245 A_BomoFB_comp10055_c0_seq8
510bp
FPKM:0.00 TPM:0.00
246 A_BomoFB_comp10055_c0_seq9
633bp
 PREDICTED:_uncharacterized_protein_LOC105893702_[Clupea_harengus]
FPKM:2.31 TPM:2.53
247 A_BomoFB_comp10056_c0_seq1
3369bp
 PREDICTED:_hairy/enhancer-of-split_related_with_YRPW_motif_protein_isoform_X5_[Bombyx_mori]
FPKM:3.75 TPM:4.11
248 A_BomoFB_comp10056_c0_seq2
861bp
 PREDICTED:_hairy/enhancer-of-split_related_with_YRPW_motif_protein_isoform_X6_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001967 P suckling behavior
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007417 P central nervous system development
GO:0009791 P post-embryonic development
GO:0010259 P multicellular organism aging
GO:0010467 P gene expression
GO:0021858 P GABAergic neuron differentiation in basal ganglia
GO:0030182 P neuron differentiation
GO:0035264 P multicellular organism growth
GO:0042803 F protein homodimerization activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
FPKM:3.72 TPM:4.08
249 A_BomoFB_comp10056_c0_seq3
2828bp
 PREDICTED:_hairy/enhancer-of-split_related_with_YRPW_motif_protein_isoform_X6_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000983 F RNA polymerase II general transcription initiation factor activity
GO:0000988 F obsolete transcription factor activity, protein binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001568 P blood vessel development
GO:0001570 P vasculogenesis
GO:0003150 P muscular septum morphogenesis
GO:0003151 P outflow tract morphogenesis
GO:0003171 P atrioventricular valve development
GO:0003184 P pulmonary valve morphogenesis
GO:0003186 P tricuspid valve morphogenesis
GO:0003195 P tricuspid valve formation
GO:0003199 P endocardial cushion to mesenchymal transition involved in heart valve formation
GO:0003208 P cardiac ventricle morphogenesis
GO:0003214 P cardiac left ventricle morphogenesis
GO:0003215 P cardiac right ventricle morphogenesis
GO:0003222 P ventricular trabecula myocardium morphogenesis
GO:0003300 P cardiac muscle hypertrophy
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007389 P pattern specification process
GO:0007507 P heart development
GO:0008134 F transcription factor binding
GO:0009948 P anterior/posterior axis specification
GO:0010460 P positive regulation of heart rate
GO:0010468 P regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0010667 P negative regulation of cardiac muscle cell apoptotic process
GO:0014031 P mesenchymal cell development
GO:0014898 P cardiac muscle hypertrophy in response to stress
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0035910 P ascending aorta morphogenesis
GO:0035912 P dorsal aorta morphogenesis
GO:0035939 F microsatellite binding
GO:0036304 P umbilical cord morphogenesis
GO:0042803 F protein homodimerization activity
GO:0042826 F histone deacetylase binding
GO:0043565 F sequence-specific DNA binding
GO:0045165 P cell fate commitment
GO:0045607 P regulation of inner ear auditory receptor cell differentiation
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0055015 P ventricular cardiac muscle cell development
GO:0060045 P positive regulation of cardiac muscle cell proliferation
GO:0060317 P cardiac epithelial to mesenchymal transition
GO:0060347 P heart trabecula formation
GO:0060411 P cardiac septum morphogenesis
GO:0060412 P ventricular septum morphogenesis
GO:0060413 P atrial septum morphogenesis
GO:0060633 P negative regulation of transcription initiation from RNA polymerase II promoter
GO:0060716 P labyrinthine layer blood vessel development
GO:0060840 P artery development
GO:0060842 P arterial endothelial cell differentiation
GO:0060948 P cardiac vascular smooth muscle cell development
GO:0060977 P coronary vasculature morphogenesis
GO:0061156 P pulmonary artery morphogenesis
GO:0061314 P Notch signaling involved in heart development
GO:0065004 P protein-DNA complex assembly
GO:0090102 P cochlea development
GO:0097084 P vascular associated smooth muscle cell development
GO:2000678 P negative regulation of transcription regulatory region DNA binding
GO:2000820 P negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation
GO:2001212 P regulation of vasculogenesis
FPKM:4.77 TPM:5.22
250 A_BomoFB_comp100570_c0_seq1
687bp
FPKM:2.48 TPM:2.71
251 A_BomoFB_comp100571_c0_seq1
227bp
FPKM:9.60 TPM:10.52
252 A_BomoFB_comp10057_c0_seq1
1254bp
 Transposon_Ty3-I_Gag-Pol_polyprotein,_partial_[Stegodyphus_mimosarum]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:6.18 TPM:6.78
253 A_BomoFB_comp10057_c1_seq1
308bp
 PREDICTED:_uncharacterized_protein_LOC105841282_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
FPKM:0.86 TPM:0.94
254 A_BomoFB_comp100581_c0_seq1
391bp
FPKM:4.43 TPM:4.86
255 A_BomoFB_comp10059_c0_seq1
1052bp
 PREDICTED:_uncharacterized_protein_LOC105841951_[Bombyx_mori]
FPKM:0.22 TPM:0.24
256 A_BomoFB_comp10059_c0_seq2
3654bp
 PREDICTED:_beta-glucuronidase_[Bombyx_mori]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004566 F beta-glucuronidase activity
GO:0005102 F signaling receptor binding
GO:0005615 C extracellular space
GO:0005764 C lysosome
GO:0005783 C endoplasmic reticulum
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0019904 F protein domain specific binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0070062 C extracellular exosome
FPKM:15.77 TPM:17.28
257 A_BomoFB_comp1005_c0_seq1
910bp
 PREDICTED:_pancreatic_lipase-related_protein_2-like_[Papilio_machaon]
GO:0004806 F triglyceride lipase activity
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006629 P lipid metabolic process
GO:0016298 F lipase activity
GO:0046872 F metal ion binding
GO:0052689 F carboxylic ester hydrolase activity
FPKM:1.34 TPM:1.47
258 A_BomoFB_comp1005_c1_seq1
222bp
 Vitellogenin_[Operophtera_brumata]
FPKM:1.16 TPM:1.27
259 A_BomoFB_comp100600_c0_seq1
265bp
FPKM:1.92 TPM:2.10
260 A_BomoFB_comp10060_c0_seq1
7598bp
 putative_coracle,_partial_[Operophtera_brumata]
GO:0003015 P heart process
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005918 C septate junction
GO:0005920 C smooth septate junction
GO:0006612 P protein targeting to membrane
GO:0007163 P establishment or maintenance of cell polarity
GO:0007275 P multicellular organism development
GO:0007391 P dorsal closure
GO:0007435 P salivary gland morphogenesis
GO:0007527 P adult somatic muscle development
GO:0008092 F cytoskeletal protein binding
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0009790 P embryo development
GO:0019991 P septate junction assembly
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045216 P cell-cell junction organization
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
FPKM:7.76 TPM:8.51
261 A_BomoFB_comp10061_c0_seq1
457bp
FPKM:0.00 TPM:0.00
262 A_BomoFB_comp10061_c0_seq2
616bp
FPKM:1.74 TPM:1.91
263 A_BomoFB_comp10061_c0_seq3
2688bp
 PREDICTED:_poly(A)_polymerase_type_3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
264 A_BomoFB_comp10061_c0_seq4
786bp
FPKM:0.27 TPM:0.29
265 A_BomoFB_comp10061_c0_seq5
2446bp
 PREDICTED:_poly(A)_polymerase_type_3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
FPKM:3.21 TPM:3.52
266 A_BomoFB_comp10061_c0_seq6
2529bp
 PREDICTED:_poly(A)_polymerase_type_3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
267 A_BomoFB_comp10061_c0_seq7
2858bp
 PREDICTED:_poly(A)_polymerase_type_3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
FPKM:1.32 TPM:1.45
268 A_BomoFB_comp10062_c0_seq1
5198bp
 PREDICTED:_heat_shock_factor-d_isoform_X4_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:1.41 TPM:1.55
269 A_BomoFB_comp10062_c0_seq10
2105bp
 heat_shock_factor-d_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:1.26 TPM:1.38
270 A_BomoFB_comp10062_c0_seq2
2036bp
 PREDICTED:_heat_shock_factor-d_isoform_X2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009408 P response to heat
GO:0022008 P neurogenesis
GO:0031427 P response to methotrexate
GO:0042742 P defense response to bacterium
GO:0042802 F identical protein binding
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050832 P defense response to fungus
FPKM:1.75 TPM:1.92
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