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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
181 A_BomaMSG_c10243_g1_i1
342bp
PREDICTED:_uncharacterized_protein_LOC105391048_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.75 TPM:0.78
182 A_BomaMSG_c10244_g1_i1
258bp
FPKM:4.33 TPM:1.93
183 A_BomaMSG_c10248_g1_i1
255bp
tyrosine-protein_kinase_Btk29A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007254 P JNK cascade
GO:0007300 P ovarian nurse cell to oocyte transport
GO:0007301 P female germline ring canal formation
GO:0007349 P cellularization
GO:0007391 P dorsal closure
GO:0007424 P open tracheal system development
GO:0007435 P salivary gland morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007485 P imaginal disc-derived male genitalia development
GO:0007619 P courtship behavior
GO:0008258 P head involution
GO:0008340 P determination of adult lifespan
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030036 P actin cytoskeleton organization
GO:0030717 P oocyte karyosome formation
GO:0030723 P ovarian fusome organization
GO:0030833 P regulation of actin filament polymerization
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035556 P intracellular signal transduction
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042023 P DNA endoreduplication
GO:0042127 P regulation of cell population proliferation
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045087 P innate immune response
GO:0045172 C germline ring canal
GO:0045177 C apical part of cell
GO:0046872 F metal ion binding
GO:0046960 P sensitization
GO:0048477 P oogenesis
GO:0071944 C cell periphery
FPKM:8.26 TPM:3.69
184 A_BomaMSG_c1024_g1_i1
560bp
FPKM:2.13 TPM:0.95
185 A_BomaMSG_c10250_g1_i1
510bp
sialin_[Helicoverpa_armigera]
GO:0003407 P neural retina development
GO:0005313 F L-glutamate transmembrane transporter activity
GO:0005737 C cytoplasm
GO:0005771 C multivesicular body
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006836 P neurotransmitter transport
GO:0007420 P brain development
GO:0007605 P sensory perception of sound
GO:0015293 F symporter activity
GO:0015813 P L-glutamate transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0043679 C axon terminus
GO:0045202 C synapse
GO:0055085 P transmembrane transport
GO:0060076 C excitatory synapse
GO:0089711 P L-glutamate transmembrane transport
GO:0090102 P cochlea development
GO:0097440 C apical dendrite
GO:0097441 C basal dendrite
GO:0097451 C glial limiting end-foot
GO:1990030 C pericellular basket
FPKM:2.62 TPM:1.17
186 A_BomaMSG_c10251_g1_i1
201bp
uncharacterized_protein_LOC101742281_isoform_X1_[Bombyx_mori]
FPKM:7.38 TPM:3.30
187 A_BomaMSG_c10251_g2_i1
382bp
uncharacterized_protein_LOC101742281_isoform_X1_[Bombyx_mori]
FPKM:2.32 TPM:1.04
188 A_BomaMSG_c10254_g1_i1
319bp
uncharacterized_protein_LOC101736946_[Bombyx_mori]
FPKM:4.77 TPM:2.13
189 A_BomaMSG_c10255_g1_i1
290bp
WD_repeat-containing_protein_35,_partial_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0030030 P cell projection organization
GO:0030991 C intraciliary transport particle A
GO:0035091 F phosphatidylinositol binding
GO:0035721 P intraciliary retrograde transport
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0061512 P protein localization to cilium
FPKM:4.31 TPM:1.93
190 A_BomaMSG_c10256_g1_i1
350bp
uncharacterized_protein_LOC101742398_[Bombyx_mori]
FPKM:6.38 TPM:2.85
191 A_BomaMSG_c10262_g1_i1
660bp
FPKM:1.32 TPM:0.59
192 A_BomaMSG_c10263_g1_i1
573bp
FPKM:30.55 TPM:13.65
193 A_BomaMSG_c10264_g1_i1
218bp
FPKM:8.61 TPM:3.85
194 A_BomaMSG_c10265_g1_i1
966bp
ribonuclease_Z,_mitochondrial_isoform_X6_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006409 P tRNA export from nucleus
GO:0007275 P multicellular organism development
GO:0007419 P ventral cord development
GO:0008033 P tRNA processing
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0030307 P positive regulation of cell growth
GO:0036093 P germ cell proliferation
GO:0042780 P tRNA 3'-end processing
GO:0045727 P positive regulation of translation
GO:0046331 P lateral inhibition
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0072684 P mitochondrial tRNA 3'-trailer cleavage, endonucleolytic
FPKM:3.88 TPM:1.73
195 A_BomaMSG_c10266_g1_i1
629bp
receptor-mediated_endocytosis_protein_6_homolog_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005829 C cytosol
GO:0006897 P endocytosis
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0032483 P regulation of Rab protein signal transduction
GO:0032794 F GTPase activating protein binding
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0051223 P regulation of protein transport
FPKM:4.08 TPM:1.82
196 A_BomaMSG_c10267_g1_i1
630bp
mediator_of_RNA_polymerase_II_transcription_subunit_13_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
FPKM:2.52 TPM:1.13
197 A_BomaMSG_c10268_g1_i1
289bp
rap1_GTPase-activating_protein_1_isoform_X4_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003924 F GTPase activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0017016 F small GTPase binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030695 F GTPase regulator activity
GO:0042803 F protein homodimerization activity
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0045665 P negative regulation of neuron differentiation
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:1903697 P negative regulation of microvillus assembly
GO:1904425 P negative regulation of GTP binding
GO:1904442 P negative regulation of thyroid gland epithelial cell proliferation
GO:1990792 P cellular response to glial cell derived neurotrophic factor
FPKM:2.89 TPM:1.29
198 A_BomaMSG_c10269_g1_i1
414bp
39S_ribosomal_protein_L17,_mitochondrial_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
FPKM:6.88 TPM:3.07
199 A_BomaMSG_c1026_g1_i1
331bp
FPKM:4.08 TPM:1.82
200 A_BomaMSG_c10270_g1_i1
849bp
FPKM:3.08 TPM:1.38
201 A_BomaMSG_c10271_g1_i1
357bp
FPKM:3.25 TPM:1.45
202 A_BomaMSG_c10272_g1_i1
832bp
E3_ubiquitin-protein_ligase_UBR4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
FPKM:2.76 TPM:1.24
203 A_BomaMSG_c10273_g1_i1
480bp
zinc_finger_protein_91_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.65 TPM:1.18
204 A_BomaMSG_c10274_g1_i1
878bp
cleavage_and_polyadenylation_specificity_factor_subunit_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0019899 F enzyme binding
GO:0035925 F mRNA 3'-UTR AU-rich region binding
FPKM:1.76 TPM:0.79
205 A_BomaMSG_c10276_g1_i1
298bp
DID_protein_isoform_X2_[Bombyx_mori]
FPKM:9.07 TPM:4.05
206 A_BomaMSG_c10277_g1_i1
753bp
uncharacterized_protein_LOC101736416_[Bombyx_mori]
FPKM:0.00 TPM:0.00
207 A_BomaMSG_c10277_g1_i2
952bp
uncharacterized_protein_LOC101736416_[Bombyx_mori]
FPKM:2.43 TPM:1.09
208 A_BomaMSG_c10278_g1_i1
375bp
FPKM:4.78 TPM:2.14
209 A_BomaMSG_c10279_g1_i1
594bp
FPKM:7.74 TPM:3.46
210 A_BomaMSG_c1027_g1_i1
496bp
LOW_QUALITY_PROTEIN:_neuroblastoma-amplified_sequence_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0005783 C endoplasmic reticulum
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0043009 P chordate embryonic development
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
FPKM:1.56 TPM:0.70
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