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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
301 A_BomoMSG_c1034_g1_i1
231bp
hypothetical_protein_AZZ76_004805,_partial_[Klebsiella_pneumoniae]
FPKM:0.00 TPM:0.00
302 A_BomoMSG_c10350_g1_i1
858bp
FPKM:1.78 TPM:0.92
303 A_BomoMSG_c10351_g1_i1
1877bp
 P-element_somatic_inhibitor_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0010628 P positive regulation of gene expression
GO:0044822 F RNA binding
FPKM:1.93 TPM:1.00
304 A_BomoMSG_c10351_g1_i2
1889bp
 P-element_somatic_inhibitor_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0010628 P positive regulation of gene expression
GO:0044822 F RNA binding
FPKM:45.73 TPM:23.79
305 A_BomoMSG_c10352_g1_i1
1573bp
FPKM:68.03 TPM:35.39
306 A_BomoMSG_c10353_g1_i1
206bp
FPKM:3.02 TPM:1.57
307 A_BomoMSG_c10354_g1_i1
467bp
 TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:6.05 TPM:3.15
308 A_BomoMSG_c10358_g1_i1
324bp
FPKM:1.72 TPM:0.90
309 A_BomoMSG_c10359_g1_i1
316bp
FPKM:3.61 TPM:1.88
310 A_BomoMSG_c10361_g1_i1
556bp
 uncharacterized_protein_LOC110385215_[Bombyx_mori]
FPKM:1.62 TPM:0.84
311 A_BomoMSG_c10362_g1_i1
813bp
 uncharacterized_protein_LOC101745594_[Bombyx_mori]
FPKM:2.62 TPM:1.36
312 A_BomoMSG_c10365_g1_i1
312bp
FPKM:7.40 TPM:3.85
313 A_BomoMSG_c10366_g1_i1
498bp
 mpv17-like_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005762 C mitochondrial large ribosomal subunit
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0061668 P mitochondrial ribosome assembly
GO:0070131 P positive regulation of mitochondrial translation
FPKM:1.26 TPM:0.66
314 A_BomoMSG_c10366_g1_i2
784bp
 mpv17-like_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005762 C mitochondrial large ribosomal subunit
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0061668 P mitochondrial ribosome assembly
GO:0070131 P positive regulation of mitochondrial translation
FPKM:3.37 TPM:1.75
315 A_BomoMSG_c10368_g1_i1
554bp
 protein_tyrosine_phosphatase_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004726 F non-membrane spanning protein tyrosine phosphatase activity
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0008285 P negative regulation of cell population proliferation
GO:0008286 P insulin receptor signaling pathway
GO:0010804 P negative regulation of tumor necrosis factor-mediated signaling pathway
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019901 F protein kinase binding
GO:0019905 F syntaxin binding
GO:0030183 P B cell differentiation
GO:0030217 P T cell differentiation
GO:0030218 P erythrocyte differentiation
GO:0030971 F receptor tyrosine kinase binding
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042512 P negative regulation of tyrosine phosphorylation of STAT protein
GO:0042518 P negative regulation of tyrosine phosphorylation of STAT protein
GO:0042524 P negative regulation of tyrosine phosphorylation of STAT protein
GO:0042527 P negative regulation of tyrosine phosphorylation of STAT protein
GO:0042593 P glucose homeostasis
GO:0045650 P negative regulation of macrophage differentiation
GO:0045722 P positive regulation of gluconeogenesis
GO:0046627 P negative regulation of insulin receptor signaling pathway
GO:0050728 P negative regulation of inflammatory response
GO:0050860 P negative regulation of T cell receptor signaling pathway
GO:0050922 P negative regulation of chemotaxis
GO:0060334 P regulation of interferon-gamma-mediated signaling pathway
GO:0060336 P negative regulation of interferon-gamma-mediated signaling pathway
GO:0060339 P negative regulation of type I interferon-mediated signaling pathway
GO:0061099 P negative regulation of protein tyrosine kinase activity
GO:0070104 P negative regulation of interleukin-6-mediated signaling pathway
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
GO:1902202 P regulation of hepatocyte growth factor receptor signaling pathway
GO:1902206 P negative regulation of interleukin-2-mediated signaling pathway
GO:1902212 P negative regulation of prolactin signaling pathway
GO:1902215 P negative regulation of interleukin-4-mediated signaling pathway
GO:1902227 P negative regulation of macrophage colony-stimulating factor signaling pathway
GO:1902233 P negative regulation of positive thymic T cell selection
GO:1902237 P positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:1903899 P positive regulation of PERK-mediated unfolded protein response
GO:2000587 P negative regulation of platelet-derived growth factor receptor-beta signaling pathway
FPKM:3.41 TPM:1.77
316 A_BomoMSG_c10369_g1_i1
507bp
 LSM_Sm-like_protein_family_member_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030629 F U6 snRNA 3'-end binding
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
FPKM:34.74 TPM:18.07
317 A_BomoMSG_c10369_g1_i2
462bp
 LSM_Sm-like_protein_family_member_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030629 F U6 snRNA 3'-end binding
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
FPKM:0.00 TPM:0.00
318 A_BomoMSG_c1036_g1_i1
228bp
FPKM:6.75 TPM:3.51
319 A_BomoMSG_c10370_g1_i1
277bp
FPKM:5.65 TPM:2.94
320 A_BomoMSG_c10372_g1_i1
500bp
FPKM:2.91 TPM:1.51
321 A_BomoMSG_c10373_g1_i1
689bp
 feline_leukemia_virus_subgroup_C_receptor-related_protein_2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0015232 F heme transmembrane transporter activity
GO:0015886 P heme transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0020037 F heme binding
GO:0055085 P transmembrane transport
FPKM:2.44 TPM:1.27
322 A_BomoMSG_c10374_g1_i1
444bp
 protein_dead_ringer_isoform_X3_[Bombyx_mori]
FPKM:2.28 TPM:1.18
323 A_BomoMSG_c10374_g1_i2
358bp
 protein_dead_ringer_isoform_X2_[Bombyx_mori]
FPKM:0.82 TPM:0.43
324 A_BomoMSG_c10375_g1_i1
355bp
 kelch-like_protein_5_[Helicoverpa_armigera]
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007626 P locomotory behavior
GO:0007628 P adult walking behavior
GO:0016358 P dendrite development
GO:0016567 P protein ubiquitination
GO:0021680 P cerebellar Purkinje cell layer development
GO:0030425 C dendrite
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043025 C neuronal cell body
FPKM:4.97 TPM:2.59
325 A_BomoMSG_c10376_g1_i1
1348bp
 vacuolar_protein-sorting-associated_protein_36_[Bombyx_mori]
GO:0000814 C ESCRT II complex
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006810 P transport
GO:0007224 P smoothened signaling pathway
GO:0008105 P protein localization
GO:0008283 P cell population proliferation
GO:0008593 P regulation of Notch signaling pathway
GO:0015031 P protein transport
GO:0019233 P sensory perception of pain
GO:0031902 C late endosome membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0042981 P regulation of apoptotic process
GO:0043130 F ubiquitin binding
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043328 P protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0045450 P bicoid mRNA localization
GO:0051028 P mRNA transport
FPKM:17.14 TPM:8.92
326 A_BomoMSG_c10377_g1_i1
1372bp
 TIA1_cytotoxic_granule-associated_RNA_binding_protein_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006952 P defense response
GO:0007281 P germ cell development
GO:0008284 P positive regulation of cell population proliferation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010494 C cytoplasmic stress granule
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0017145 P stem cell division
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:4.40 TPM:2.29
327 A_BomoMSG_c10377_g1_i2
1414bp
 TIA1_cytotoxic_granule-associated_RNA_binding_protein_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006952 P defense response
GO:0007281 P germ cell development
GO:0008284 P positive regulation of cell population proliferation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010494 C cytoplasmic stress granule
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0017145 P stem cell division
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:6.51 TPM:3.39
328 A_BomoMSG_c10377_g1_i3
1432bp
 TIA-1_homologue_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006952 P defense response
GO:0007281 P germ cell development
GO:0008284 P positive regulation of cell population proliferation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010494 C cytoplasmic stress granule
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0017145 P stem cell division
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:33.16 TPM:17.25
329 A_BomoMSG_c10377_g1_i4
1390bp
 TIA1_cytotoxic_granule-associated_RNA_binding_protein_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006952 P defense response
GO:0007281 P germ cell development
GO:0008284 P positive regulation of cell population proliferation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010494 C cytoplasmic stress granule
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0017145 P stem cell division
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:73.62 TPM:38.30
330 A_BomoMSG_c10381_g1_i1
1001bp
 mitochondrial_ribosomal_protein_L2_isoform_X1_[Bombyx_mori]
GO:0002181 P cytoplasmic translation
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0016740 F transferase activity
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
FPKM:33.79 TPM:17.58
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