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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1651 A_BomoMSG_c11812_g1_i1
220bp
FPKM:3.31 TPM:1.72
1652 A_BomoMSG_c11813_g1_i1
250bp
FPKM:0.00 TPM:0.00
1653 A_BomoMSG_c11813_g1_i2
256bp
FPKM:7.30 TPM:3.80
1654 A_BomoMSG_c11814_g1_i1
263bp
FPKM:0.53 TPM:0.27
1655 A_BomoMSG_c11814_g1_i2
298bp
FPKM:2.43 TPM:1.26
1656 A_BomoMSG_c11815_g1_i1
446bp
FPKM:2.23 TPM:1.16
1657 A_BomoMSG_c1181_g1_i1
258bp
FPKM:1.44 TPM:0.75
1658 A_BomoMSG_c11820_g1_i1
721bp
 26S_proteasome_non-ATPase_regulatory_subunit_10-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000165 P MAPK cascade
GO:0000209 P protein polyubiquitination
GO:0000502 C proteasome complex
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005838 C proteasome regulatory particle
GO:0006521 P regulation of cellular amino acid metabolic process
GO:0006915 P apoptotic process
GO:0007253 P cytoplasmic sequestering of NF-kappaB
GO:0008134 F transcription factor binding
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0030307 P positive regulation of cell growth
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0031398 P positive regulation of protein ubiquitination
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0038061 P NIK/NF-kappaB signaling
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043409 P negative regulation of MAPK cascade
GO:0043488 P regulation of mRNA stability
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0045111 C intermediate filament cytoskeleton
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0050852 P T cell receptor signaling pathway
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
GO:0070682 P proteasome regulatory particle assembly
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090201 P negative regulation of release of cytochrome c from mitochondria
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:62.41 TPM:32.47
1659 A_BomoMSG_c11821_g1_i1
2414bp
 KDEL_endoplasmic_reticulum_protein_retention_receptor_2_[Bombyx_mori]
GO:0005046 F KDEL sequence binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006621 P protein retention in ER lumen
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0019233 P sensory perception of pain
GO:0030140 C trans-Golgi network transport vesicle
GO:0046923 F ER retention sequence binding
FPKM:131.03 TPM:68.17
1660 A_BomoMSG_c11822_g1_i1
371bp
 putative_glutathione-specific_gamma-glutamylcyclotransferase_2_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
FPKM:4.88 TPM:2.54
1661 A_BomoMSG_c11823_g1_i1
628bp
 ken_and_barbie_protein_isoform_X1_[Bombyx_mori]
FPKM:1.63 TPM:0.85
1662 A_BomoMSG_c11824_g1_i1
394bp
 protein_melted_isoform_X3_[Bombyx_mori]
GO:0001708 P cell fate specification
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0007422 P peripheral nervous system development
GO:0008152 P metabolic process
GO:0008286 P insulin receptor signaling pathway
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0016020 C membrane
GO:0030730 P sequestering of triglyceride
GO:0035091 F phosphatidylinositol binding
GO:0045464 P R8 cell fate specification
GO:2001020 P regulation of response to DNA damage stimulus
FPKM:2.70 TPM:1.41
1663 A_BomoMSG_c11825_g1_i1
442bp
 uncharacterized_protein_LOC100302108_[Bombyx_mori]
GO:0003954 F NADH dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:25.17 TPM:13.09
1664 A_BomoMSG_c11825_g1_i2
493bp
 uncharacterized_protein_LOC100302108_[Bombyx_mori]
FPKM:100.93 TPM:52.50
1665 A_BomoMSG_c11825_g1_i3
479bp
 uncharacterized_protein_LOC100302108_[Bombyx_mori]
GO:0003954 F NADH dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:23.78 TPM:12.37
1666 A_BomoMSG_c11827_g1_i1
281bp
FPKM:1.83 TPM:0.95
1667 A_BomoMSG_c11828_g1_i1
331bp
FPKM:1.66 TPM:0.86
1668 A_BomoMSG_c11829_g1_i1
254bp
 PREDICTED:_putative_uncharacterized_protein_FLJ37770_[Stomoxys_calcitrans]
FPKM:2.86 TPM:1.49
1669 A_BomoMSG_c1182_g1_i1
238bp
 uncharacterized_protein_LOC110383228_[Helicoverpa_armigera]
FPKM:0.67 TPM:0.35
1670 A_BomoMSG_c11832_g1_i1
473bp
 autophagy-related_protein_2_homolog_A_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0005515 F protein binding
GO:0005811 C lipid droplet
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0034045 C phagophore assembly site membrane
GO:0044804 P autophagy of nucleus
FPKM:5.01 TPM:2.61
1671 A_BomoMSG_c11834_g1_i1
448bp
FPKM:3.02 TPM:1.57
1672 A_BomoMSG_c11835_g1_i1
390bp
 protein-serine_O-palmitoleoyltransferase_porcupine_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006497 P protein lipidation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0045234 P protein palmitoleylation
GO:1990698 F palmitoleoyltransferase activity
FPKM:1.50 TPM:0.78
1673 A_BomoMSG_c11835_g1_i2
331bp
 protein-serine_O-palmitoleoyltransferase_porcupine_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006497 P protein lipidation
GO:0009100 P glycoprotein metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0017147 F Wnt-protein binding
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0032281 C AMPA glutamate receptor complex
GO:0045234 P protein palmitoleylation
GO:0060070 P canonical Wnt signaling pathway
GO:1990698 F palmitoleoyltransferase activity
FPKM:0.00 TPM:0.00
1674 A_BomoMSG_c11838_g1_i1
916bp
 rRNA-processing_protein_UTP23_homolog_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0070181 F small ribosomal subunit rRNA binding
FPKM:14.12 TPM:7.34
1675 A_BomoMSG_c11838_g1_i2
996bp
 rRNA-processing_protein_UTP23_homolog_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0070181 F small ribosomal subunit rRNA binding
FPKM:16.94 TPM:8.81
1676 A_BomoMSG_c11840_g1_i1
243bp
 PREDICTED:_uncharacterized_protein_LOC106141127_[Amyelois_transitella]
FPKM:4.46 TPM:2.32
1677 A_BomoMSG_c11841_g1_i1
515bp
 PREDICTED:_aspartate--tRNA_ligase,_mitochondrial_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004815 F aspartate-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0016874 F ligase activity
GO:0042803 F protein homodimerization activity
GO:0043039 P tRNA aminoacylation
GO:0050560 F aspartate-tRNA(Asn) ligase activity
FPKM:2.16 TPM:1.12
1678 A_BomoMSG_c11844_g1_i1
355bp
FPKM:1.75 TPM:0.91
1679 A_BomoMSG_c11845_g1_i1
597bp
FPKM:5.09 TPM:2.65
1680 A_BomoMSG_c11846_g1_i1
558bp
 uncharacterized_protein_LOC101737389_[Bombyx_mori]
FPKM:0.41 TPM:0.22
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