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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1891 A_BomoN4EE_TR101214_c0_g1_i2
3154bp
 glycerol_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004370 F glycerol kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006071 P glycerol metabolic process
GO:0006072 P glycerol-3-phosphate metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0019563 P glycerol catabolic process
FPKM:1.35 TPM:1.80
1892 A_BomoN4EE_TR101215_c0_g1_i1
897bp
 PREDICTED:_uncharacterized_protein_LOC101742721_isoform_X1_[Bombyx_mori]
FPKM:0.29 TPM:0.38
1893 A_BomoN4EE_TR101215_c0_g2_i1
898bp
 PREDICTED:_uncharacterized_protein_LOC101742721_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1894 A_BomoN4EE_TR101215_c1_g1_i1
484bp
FPKM:0.30 TPM:0.40
1895 A_BomoN4EE_TR101215_c1_g2_i1
656bp
 putative_polyprotein_[Danaus_plexippus]
FPKM:2.32 TPM:3.08
1896 A_BomoN4EE_TR101215_c1_g3_i1
1274bp
 PREDICTED:_uncharacterized_protein_LOC101742721_isoform_X2_[Bombyx_mori]
FPKM:0.43 TPM:0.57
1897 A_BomoN4EE_TR101215_c2_g1_i1
255bp
FPKM:0.41 TPM:0.55
1898 A_BomoN4EE_TR101215_c3_g1_i1
499bp
FPKM:0.38 TPM:0.50
1899 A_BomoN4EE_TR101216_c0_g1_i1
2444bp
 PREDICTED:_CDP-diacylglycerol--glycerol-3-phosphate_3-phosphatidyltransferase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008444 F CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 P phospholipid biosynthetic process
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
FPKM:7.82 TPM:10.42
1900 A_BomoN4EE_TR101216_c0_g1_i2
2433bp
 PREDICTED:_CDP-diacylglycerol--glycerol-3-phosphate_3-phosphatidyltransferase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008444 F CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 P phospholipid biosynthetic process
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
FPKM:5.69 TPM:7.58
1901 A_BomoN4EE_TR101217_c0_g1_i1
1447bp
 PREDICTED:_leucine-rich_PPR_motif-containing_protein,_mitochondrial-like_[Amyelois_transitella]
GO:0000794 C condensed nuclear chromosome
GO:0000961 P negative regulation of mitochondrial RNA catabolic process
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0031625 F ubiquitin protein ligase binding
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048487 F beta-tubulin binding
GO:0051015 F actin filament binding
GO:0051028 P mRNA transport
GO:0070129 P regulation of mitochondrial translation
FPKM:6.60 TPM:8.80
1902 A_BomoN4EE_TR101217_c0_g1_i2
2826bp
 PREDICTED:_leucine-rich_PPR_motif-containing_protein,_mitochondrial-like_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
FPKM:3.58 TPM:4.76
1903 A_BomoN4EE_TR101217_c0_g1_i3
3826bp
 PREDICTED:_leucine-rich_PPR_motif-containing_protein,_mitochondrial-like_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
FPKM:5.98 TPM:7.97
1904 A_BomoN4EE_TR101217_c1_g1_i1
228bp
FPKM:1.80 TPM:2.39
1905 A_BomoN4EE_TR101217_c2_g1_i1
784bp
 PREDICTED:_uncharacterized_protein_LOC106134739_[Amyelois_transitella]
FPKM:0.98 TPM:1.31
1906 A_BomoN4EE_TR101217_c3_g1_i1
317bp
 PREDICTED:_uncharacterized_protein_LOC106134739_[Amyelois_transitella]
FPKM:0.23 TPM:0.30
1907 A_BomoN4EE_TR101218_c0_g1_i1
3229bp
 hypothetical_protein_KGM_08302_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045335 C phagocytic vesicle
GO:0090383 P phagosome acidification
GO:0090385 P phagosome-lysosome fusion
FPKM:0.67 TPM:0.89
1908 A_BomoN4EE_TR101218_c0_g2_i1
5447bp
 hypothetical_protein_KGM_08302_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045335 C phagocytic vesicle
GO:0090383 P phagosome acidification
GO:0090385 P phagosome-lysosome fusion
FPKM:0.87 TPM:1.16
1909 A_BomoN4EE_TR101218_c0_g2_i2
5446bp
 hypothetical_protein_KGM_08302_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045335 C phagocytic vesicle
GO:0090383 P phagosome acidification
GO:0090385 P phagosome-lysosome fusion
FPKM:11.24 TPM:14.98
1910 A_BomoN4EE_TR101219_c0_g1_i1
411bp
FPKM:0.00 TPM:0.00
1911 A_BomoN4EE_TR101219_c0_g2_i1
3463bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:6.85 TPM:9.12
1912 A_BomoN4EE_TR101219_c1_g1_i1
410bp
FPKM:1.07 TPM:1.42
1913 A_BomoN4EE_TR10121_c0_g1_i1
342bp
FPKM:0.19 TPM:0.26
1914 A_BomoN4EE_TR101220_c0_g1_i1
3190bp
 PREDICTED:_uncharacterized_protein_LOC101744303_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016235 C aggresome
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0035098 C ESC/E(Z) complex
GO:0035518 P histone H2A monoubiquitination
GO:0036353 P histone H2A-K119 monoubiquitination
GO:0042803 F protein homodimerization activity
GO:0046600 P negative regulation of centriole replication
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070842 P aggresome assembly
FPKM:2.84 TPM:3.78
1915 A_BomoN4EE_TR101220_c0_g1_i2
3229bp
 PREDICTED:_uncharacterized_protein_LOC101744303_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016235 C aggresome
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0035098 C ESC/E(Z) complex
GO:0035518 P histone H2A monoubiquitination
GO:0036353 P histone H2A-K119 monoubiquitination
GO:0042803 F protein homodimerization activity
GO:0046600 P negative regulation of centriole replication
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070842 P aggresome assembly
FPKM:0.56 TPM:0.75
1916 A_BomoN4EE_TR101220_c0_g1_i3
3205bp
 PREDICTED:_uncharacterized_protein_LOC101744303_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016235 C aggresome
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0035098 C ESC/E(Z) complex
GO:0035518 P histone H2A monoubiquitination
GO:0036353 P histone H2A-K119 monoubiquitination
GO:0042803 F protein homodimerization activity
GO:0046600 P negative regulation of centriole replication
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070842 P aggresome assembly
FPKM:2.88 TPM:3.83
1917 A_BomoN4EE_TR101220_c0_g1_i4
3373bp
 PREDICTED:_E3_ubiquitin-protein_ligase_TRIM37-like_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016235 C aggresome
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0035098 C ESC/E(Z) complex
GO:0035518 P histone H2A monoubiquitination
GO:0036353 P histone H2A-K119 monoubiquitination
GO:0042803 F protein homodimerization activity
GO:0046600 P negative regulation of centriole replication
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070842 P aggresome assembly
FPKM:1.28 TPM:1.71
1918 A_BomoN4EE_TR101220_c0_g1_i5
3214bp
 PREDICTED:_uncharacterized_protein_LOC101744303_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016235 C aggresome
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0035098 C ESC/E(Z) complex
GO:0035518 P histone H2A monoubiquitination
GO:0036353 P histone H2A-K119 monoubiquitination
GO:0042803 F protein homodimerization activity
GO:0046600 P negative regulation of centriole replication
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070842 P aggresome assembly
FPKM:0.56 TPM:0.74
1919 A_BomoN4EE_TR101220_c0_g1_i6
3358bp
 PREDICTED:_E3_ubiquitin-protein_ligase_TRIM37-like_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016235 C aggresome
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0035098 C ESC/E(Z) complex
GO:0035518 P histone H2A monoubiquitination
GO:0036353 P histone H2A-K119 monoubiquitination
GO:0042803 F protein homodimerization activity
GO:0046600 P negative regulation of centriole replication
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070842 P aggresome assembly
FPKM:1.37 TPM:1.83
1920 A_BomoN4EE_TR101220_c1_g1_i1
429bp
FPKM:1.72 TPM:2.29
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