SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR101220_c0_g1_i6
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIM37-like_isoform_X4_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016235 C aggresome
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0035098 C ESC/E(Z) complex
GO:0035518 P histone H2A monoubiquitination
GO:0036353 P histone H2A-K119 monoubiquitination
GO:0042803 F protein homodimerization activity
GO:0046600 P negative regulation of centriole replication
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070842 P aggresome assembly
Transcript
Level		FPKM:1.37 TPM:1.83
ORF EntryO_BomoN4EE51468_complete:A_BomoN4EE_TR101220_c0_g1_i6
Sequence
(Nucleotide)
TTTTCATTTCAACAAAATTATATCAACAAAACCATTGTGACATCCCAGATTTGTCCATAT
TCTACCTCTAGTCCCTATTCCCCCCAATCTACTGTACACGTTTTATACCAACAAAACTTT
ACATTACTCAAAACATATAAAAATCTCATGCGAGTCTAAGTCTTACCGACCACCGCTCAA
GCCATCAATGGAACAACAGAAATACGGGAGAATTATAAGAGGGCGTTCCGCATATCCGTA
TCGGTCGTGTTATATTTACGTTGCAATCCAAAATGAATTCGACCTCGTCATTGTCGCTGA
CGGAGGACACGGAGGGCCAGTAGTCGTGCAGTGCCAGGTCGGGGACGGGCGACACCGCGC
CGCGCTCCGGCGTGCCGGGAGGGGTCGGCCCGTAGTTCAGGTTGGCAGGACGTCTGTGGC
GCAGTTGTCCAGGGGAAAGGGGTGTGCGCCGCGGTCGGTGCGAGGCGGGATGGTTGAGGG
GGGTGGCGGGGTGCAGCGGGGTGCCTCGCCGCGGGGGGCGGGGGGCGTGAGCGCCGCGAC
TGAGAATCCCCGCGGAGCTCTGACCGTTCCAATTGCGTTTCGGACCGTTCTTGGCGGAGG
GTTTCGGCGTGAGTCCGTTGATCCGCATGAGGTTGAGCAGCAGCATGTCGGTGTGCGCGG
CCGTGGACAGCTGCGGGTCGGCGTCGTGGTGCGCGGTGGCCGACAGCGCGGCGCGGTCCG
GTCCCGCCTCCGCGCACAGCAGCCGCGACAGGATGTCCGAGCCGTCCCGCGAGCTGTACC
CGCAGGCGCCCTCTATGTCGTTCTCGCCCGACATGGTCTCGTCGTCAACGTCATTCTCTT
CGTTCGAGTTTTCGTCGACATGAACGGTGTGGGTCTCGTCGGCAAATACCTCTAATTCGC
TGAACATCAACTCCCCGGTGTCGCTGCTGGACTCGGAGGCGGCGTGCGCACCGCGGGCCG
GGTTGCGGTTGTCGCACTCCGTTTCGCCTTCAGTCTTGGCTCGACCGCTGTGGGAGGCAC
ACGCGGCCTCCGCGCTGGGAGCCGCCGCGTTCAACTCCGGCGACGACATCGAGGAGCACA
GCAACACGTTCGAGGCCGATTGACTTATTTCCGTTGCTGGACTGCTGGCCACGGCAGTCA
ATGTGGAGTCCTTAGCTGGAACCTGTTTGTCGGTGCGTGGCATTTTGTTGGGCAGCTTGT
TGGGCGCGCGGCTGGGCGTGTTGGCGGCGCTGAGCAGCGTGTGCAAGCTCACCAGCGCCA
TGTTGTCCGCGCCGGATACATGAAGGGAGTTTGCTGAACGTGAGGTAGAAGGTAGATTAT
AAGGGGCGAGCAAAGTGTGAGGTTGCGCCATTCGTCTCGTGTCCATAGACTGAGCGTAGT
CTCCGAAGCCGAAGGCACTGGCCGATTGACTAGACACTTCATTATTACGGCTGTCCTCAG
CAAACATGGCTGTGTTTAGGATATCGTTAGACATTCTCGTACTGTTGAGAGCGCCGTGCT
GGCCGCATTGCTTCCACAACACTAAGACATCATTGACAGAGTTACCGTCGACGGGGTTGT
TCTGCGCGGGGTTGTCGGCCTCGTTCGGGCCGGCGTTGGACTGCGAACTGCTCGTGCCCG
TCGTGACAGCGCGAGTGGCCGCCAGTGAGTTCCGCGACATCTCCAACGAGAGGCGCTCTT
TGAGATCATTGATCTGCAGTACGTGTTGATTCTGCATTGTAATCAGTTGGTTTATGTACC
ACTGCTGGTCGCGGCAACGTTGATAGAACGTAGGCGGACGTACTTGGAACCTCAATATTA
AGGTATCGGTTTCTGGGTTCAAGTACCCCTCGCTGGCCAACAGATCAAGTCTGAAGAAAC
GATTGTAGCCCCAACATTCGCCGACTTCAAAGTCGGACGCGAATTCCCTTACAATGTTCT
TGGAGGGGTCGCGCGACACTTGGTGCAACATTTCCACTCGATACTCATACTTTGAAGTCT
CTGGCAATCCGGCACTGAGCTCCAAGAATACGGAGAGATAGTTCCCTCGAACTACACCAT
TGCCATCTGGGTACACCTTCAGCCTCCAACATAGACCGTTGACGTGTAATGGGGCCGAGT
AGACGGGCGCGGCCGCGTGTTGGAGCTGAGTGAAGTTTGCTAGCGGGAAAGTGCTGCTGT
CGTAACTCGGAACGATTTCACTGTGAAAATCAGCCGGTACGGGGGCAGTGACAAAACTAG
CCATTGGCTTCTTTCGCACTTGATGTATCATCTTTGATAGATCACCACTCCGTGCTATCA
ACTCTGATCTTGTACTAGTATGTAGTTGATGTTCAATCTCCTGTAGCAAATGTTCAAGCT
GCTCCGTCTCCTGAGTGAGGCTATTCTTCTGTCCCATTAAAGTAAGCAGTTTAGCCTTCA
ATGCAGAATCCAATCTGGAGATCATCAGCTCAACGGCATTGCGAATCTCACGCACTCGTT
CATCTTTTGCTGCTCTCACTGATTCTACATTGCGTTCAACATCCTGGACAAGGCTAATTA
GCTCCATAAGCCTTCTCCGCAGTTGAGTGACTTCATCACGTATCTGAGTAACATGTTGCT
CATATACCTCTTCCAGCGGTTTGAAGGTGTGCCCCGAATGGGTGCCACCCCAGAGAGCGC
ACTGATGACATATACAGCGACGACACGTCCAGCAATAGACAGTAAGTTTTTCTTGATGAT
TAGGGCATCTATCACGATAATTCTCACGGTGGCTGGCGGTGTTAGTTTGTTGCATGGTCT
CTATTTGCTGAGTGACCTCTTCAACCCAGCGACAATTCACCAACTCATGTAGGTGTAGTG
CAGCTCGACAGTGAGGACATTGGGAGCGTTGCTCCGTCAACCAACGCCGCACACAAGCAT
AACAACACAACTTTGAGCAGTGTGGACACAGATGTGCATCCACCAGCTTCTCCATACAGA
TGAAGCAGCGGAACACTTCAGCTAACGTCTCCACAATTTGCTCCTCGCCATTTCCATTCC
CTTTGTCTCCCCGCGAGGCCATATTTGAACTACACTTCACTTGATACAATATTGGCGATT
AATCTACCATAATTTAGATTGTTTGCATTCCTAAATTAAAATGCAAGTCTCTCATATCGC
AAGACAAGAGAATCAAATCGAATACACGCAAAACGAGACTCACTTCCGCGTTCGGAATTC
AAAAGTAGGTAGAATTAAATAAAAATGAAATTGGTAAAGTCAAAAATAATAACAACATTA
AAGCTTGCCATGTTTTGGTTCTAATTTCCCGTCATGATCTATGCAAGTGTAGTGTTCGCT
CACGCGGCCTGCGCCAACTTAAAATCACTCCAAATTATTCAATCCCGTTTTTGCAGGA
(3358 bp)

- SilkBase 1999-2023 -