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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
181 A_BomoN4EE_TR1000_c0_g1_i1
283bp
FPKM:0.00 TPM:0.00
182 A_BomoN4EE_TR100100_c0_g1_i1
309bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:11.10 TPM:14.78
183 A_BomoN4EE_TR100100_c0_g2_i1
298bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:0.37 TPM:0.49
184 A_BomoN4EE_TR100101_c0_g1_i1
2296bp
 nervous_wreck_M_[Bombyx_mori]
FPKM:0.00 TPM:0.00
185 A_BomoN4EE_TR100101_c0_g2_i1
2784bp
 nervous_wreck_M_[Bombyx_mori]
FPKM:0.50 TPM:0.67
186 A_BomoN4EE_TR100101_c0_g3_i1
2785bp
 nervous_wreck_M_[Bombyx_mori]
FPKM:0.12 TPM:0.17
187 A_BomoN4EE_TR100101_c1_g1_i1
1036bp
 nervous_wreck_[Bombyx_mori]
GO:0005515 F protein binding
FPKM:0.41 TPM:0.55
188 A_BomoN4EE_TR100101_c2_g1_i1
483bp
 nervous_wreck_L_[Bombyx_mori]
FPKM:0.10 TPM:0.13
189 A_BomoN4EE_TR100102_c0_g1_i1
6425bp
 ecdysone_receptor_isoform_B1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004884 F nuclear receptor activity
GO:0005496 F steroid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:4.20 TPM:5.59
190 A_BomoN4EE_TR100102_c0_g1_i2
6306bp
 ecdysone_receptor_isoform_B1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004884 F nuclear receptor activity
GO:0005496 F steroid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:1.53 TPM:2.04
191 A_BomoN4EE_TR100102_c0_g2_i1
6297bp
 EcRB1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004884 F nuclear receptor activity
GO:0005496 F steroid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:3.45 TPM:4.59
192 A_BomoN4EE_TR100102_c0_g2_i2
6416bp
 ecdysone_receptor_isoform_B2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004884 F nuclear receptor activity
GO:0005496 F steroid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:9.17 TPM:12.22
193 A_BomoN4EE_TR100103_c0_g1_i1
1241bp
FPKM:9.63 TPM:12.83
194 A_BomoN4EE_TR100103_c0_g2_i1
1242bp
FPKM:0.00 TPM:0.00
195 A_BomoN4EE_TR100104_c0_g1_i1
2647bp
 PREDICTED:_uncharacterized_protein_C18orf19_homolog_A_isoform_X1_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:8.96 TPM:11.93
196 A_BomoN4EE_TR100104_c0_g2_i1
4884bp
 PREDICTED:_LIM_domain-containing_protein_jub_[Papilio_machaon]
GO:0000242 C pericentriolar material
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0007067 P mitotic cell cycle
GO:0008270 F zinc ion binding
GO:0030054 C cell junction
GO:0030707 P ovarian follicle cell development
GO:0035329 P hippo signaling
GO:0045177 C apical part of cell
GO:0045179 C apical cortex
GO:0045572 P positive regulation of imaginal disc growth
GO:0046622 P positive regulation of organ growth
GO:0046872 F metal ion binding
GO:0071539 P protein localization to centrosome
FPKM:16.30 TPM:21.71
197 A_BomoN4EE_TR100104_c1_g1_i1
257bp
 P-type_conjugative_transfer_protein_VirB9_[Escherichia_coli]
FPKM:0.80 TPM:1.07
198 A_BomoN4EE_TR100105_c0_g1_i1
1693bp
 PREDICTED:_mannose-6-phosphate_isomerase_[Amyelois_transitella]
GO:0004476 F mannose-6-phosphate isomerase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0008270 F zinc ion binding
GO:0009298 P GDP-mannose biosynthetic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
GO:0061611 P mannose to fructose-6-phosphate metabolic process
GO:0070062 C extracellular exosome
FPKM:2.86 TPM:3.81
199 A_BomoN4EE_TR100105_c0_g2_i1
1201bp
 PREDICTED:_mannose-6-phosphate_isomerase_[Amyelois_transitella]
GO:0004476 F mannose-6-phosphate isomerase activity
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0008270 F zinc ion binding
GO:0009298 P GDP-mannose biosynthetic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
FPKM:1.21 TPM:1.61
200 A_BomoN4EE_TR100106_c0_g1_i1
2909bp
 PREDICTED:_fasciculation_and_elongation_protein_zeta-1_isoform_X1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:1902902 P negative regulation of autophagosome assembly
FPKM:0.00 TPM:0.00
201 A_BomoN4EE_TR100106_c0_g2_i1
3112bp
 PREDICTED:_fasciculation_and_elongation_protein_zeta-1_isoform_X1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:1902902 P negative regulation of autophagosome assembly
FPKM:27.04 TPM:36.02
202 A_BomoN4EE_TR100107_c0_g1_i1
2466bp
 Homeobox_protein_ceh-19_[Papilio_xuthus]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
FPKM:1.96 TPM:2.62
203 A_BomoN4EE_TR100108_c0_g1_i1
2627bp
 PREDICTED:_iron-sulfur_cluster_assembly_1_homolog,_mitochondrial_[Amyelois_transitella]
GO:0005198 F structural molecule activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006790 P sulfur compound metabolic process
GO:0008198 F ferrous iron binding
GO:0016226 P iron-sulfur cluster assembly
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051537 F 2 iron, 2 sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0097428 P protein maturation by iron-sulfur cluster transfer
FPKM:0.28 TPM:0.37
204 A_BomoN4EE_TR100108_c0_g2_i1
3013bp
 PREDICTED:_iron-sulfur_cluster_assembly_1_homolog,_mitochondrial_[Amyelois_transitella]
GO:0005198 F structural molecule activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006790 P sulfur compound metabolic process
GO:0008198 F ferrous iron binding
GO:0016226 P iron-sulfur cluster assembly
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051537 F 2 iron, 2 sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071000 P response to magnetism
GO:0097428 P protein maturation by iron-sulfur cluster transfer
FPKM:7.29 TPM:9.72
205 A_BomoN4EE_TR100109_c0_g1_i1
4474bp
 PREDICTED:_uncharacterized_protein_LOC106129437_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000775 C chromosome, centromeric region
GO:0001741 C XY body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0005938 C cell cortex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0008134 F transcription factor binding
GO:0008432 F JUN kinase binding
GO:0010038 P response to metal ion
GO:0010832 P negative regulation of myotube differentiation
GO:0016568 P chromatin organization
GO:0016605 C PML body
GO:0019894 F kinesin binding
GO:0019901 F protein kinase binding
GO:0030578 P PML body organization
GO:0031396 P regulation of protein ubiquitination
GO:0033129 P positive regulation of histone phosphorylation
GO:0042803 F protein homodimerization activity
GO:0043005 C neuron projection
GO:0043065 P positive regulation of apoptotic process
GO:0044297 C cell body
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0050681 F androgen receptor binding
GO:0071356 P cellular response to tumor necrosis factor
GO:0071454 P cellular response to anoxia
FPKM:22.95 TPM:30.57
206 A_BomoN4EE_TR10010_c0_g1_i1
341bp
 chromosome_partitioning_protein_ParA_[Pontibacter_korlensis]
FPKM:0.39 TPM:0.52
207 A_BomoN4EE_TR100110_c0_g1_i1
2781bp
 p53_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005783 C endoplasmic reticulum
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0012501 P programmed cell death
GO:0043153 P entrainment of circadian clock by photoperiod
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0048512 P circadian behavior
GO:0051262 P protein tetramerization
FPKM:10.31 TPM:13.73
208 A_BomoN4EE_TR100111_c0_g1_i1
2590bp
 bestrophin_2_[Spodoptera_littoralis]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0015698 P inorganic anion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034707 C chloride channel complex
GO:0043271 P negative regulation of ion transport
GO:1902476 P chloride transmembrane transport
FPKM:7.02 TPM:9.34
209 A_BomoN4EE_TR100112_c0_g1_i1
5310bp
 PREDICTED:_josephin-2_[Amyelois_transitella]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008242 F omega peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
FPKM:0.43 TPM:0.57
210 A_BomoN4EE_TR100112_c0_g2_i1
5309bp
 PREDICTED:_josephin-2_[Amyelois_transitella]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008242 F omega peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
FPKM:8.19 TPM:10.91
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