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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1021 A_BomoN4EE_TR100579_c0_g1_i1
375bp
FPKM:0.79 TPM:1.05
1022 A_BomoN4EE_TR10057_c0_g1_i1
304bp
FPKM:0.51 TPM:0.67
1023 A_BomoN4EE_TR100580_c0_g1_i1
409bp
 hypothetical_protein_RR46_03787,_partial_[Papilio_xuthus]
FPKM:0.97 TPM:1.29
1024 A_BomoN4EE_TR100580_c0_g1_i2
585bp
 hypothetical_protein_RR46_03787,_partial_[Papilio_xuthus]
FPKM:2.74 TPM:3.65
1025 A_BomoN4EE_TR100580_c0_g1_i3
640bp
 Uncharacterized_protein_OBRU01_26553,_partial_[Operophtera_brumata]
FPKM:0.24 TPM:0.32
1026 A_BomoN4EE_TR100581_c0_g1_i1
475bp
FPKM:7.91 TPM:10.53
1027 A_BomoN4EE_TR100582_c0_g1_i1
2474bp
 PREDICTED:_FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007416 P synapse assembly
GO:0008092 F cytoskeletal protein binding
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0030425 C dendrite
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035023 P regulation of Rho protein signal transduction
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043197 C dendritic spine
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0048365 F small GTPase binding
GO:0048813 P dendrite morphogenesis
FPKM:11.78 TPM:15.70
1028 A_BomoN4EE_TR100582_c0_g1_i2
2379bp
 PREDICTED:_FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007416 P synapse assembly
GO:0008092 F cytoskeletal protein binding
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0030425 C dendrite
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035023 P regulation of Rho protein signal transduction
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043197 C dendritic spine
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0048365 F small GTPase binding
GO:0048813 P dendrite morphogenesis
FPKM:5.32 TPM:7.08
1029 A_BomoN4EE_TR100582_c1_g1_i1
350bp
 hypothetical_protein_MAM_05383_[Metarhizium_album_ARSEF_1941]
FPKM:1.10 TPM:1.46
1030 A_BomoN4EE_TR100583_c0_g1_i1
404bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.21 TPM:0.27
1031 A_BomoN4EE_TR100583_c0_g2_i1
404bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.21 TPM:0.27
1032 A_BomoN4EE_TR100584_c0_g1_i1
233bp
FPKM:1.11 TPM:1.48
1033 A_BomoN4EE_TR100585_c0_g1_i1
1537bp
 oligoribonuclease,_mitochondrial_[Danaus_plexippus]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0005925 C focal adhesion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:25.76 TPM:34.32
1034 A_BomoN4EE_TR100585_c0_g1_i2
1620bp
 oligoribonuclease,_mitochondrial_[Danaus_plexippus]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0005925 C focal adhesion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:4.77 TPM:6.35
1035 A_BomoN4EE_TR100585_c0_g1_i3
2585bp
 oligoribonuclease,_mitochondrial_[Danaus_plexippus]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008946 F oligonucleotidase activity
GO:0009267 P cellular response to starvation
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:5.05 TPM:6.72
1036 A_BomoN4EE_TR100585_c0_g1_i4
2286bp
 oligoribonuclease,_mitochondrial_[Danaus_plexippus]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008946 F oligonucleotidase activity
GO:0009267 P cellular response to starvation
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:1.94 TPM:2.58
1037 A_BomoN4EE_TR100586_c0_g1_i1
374bp
 Collagenase_[Papilio_xuthus]
FPKM:0.00 TPM:0.00
1038 A_BomoN4EE_TR100586_c0_g2_i1
374bp
 Serine_protease_65_[Operophtera_brumata]
FPKM:0.16 TPM:0.21
1039 A_BomoN4EE_TR100587_c0_g1_i1
4425bp
 PREDICTED:_probable_serine/threonine-protein_kinase_DDB_G0278901_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001707 P mesoderm formation
GO:0001893 P maternal placenta development
GO:0001935 P endothelial cell proliferation
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0001946 P lymphangiogenesis
GO:0001974 P blood vessel remodeling
GO:0002063 P chondrocyte development
GO:0003085 P negative regulation of systemic arterial blood pressure
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004675 F transmembrane receptor protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007178 P transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0007420 P brain development
GO:0009267 P cellular response to starvation
GO:0009925 C basal plasma membrane
GO:0009952 P anterior/posterior pattern specification
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0010634 P positive regulation of epithelial cell migration
GO:0010862 P positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0014916 P regulation of lung blood pressure
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016324 C apical plasma membrane
GO:0016362 F activin receptor activity, type II
GO:0016740 F transferase activity
GO:0019838 F growth factor binding
GO:0023014 P signal transduction
GO:0030166 P proteoglycan biosynthetic process
GO:0030308 P negative regulation of cell growth
GO:0030425 C dendrite
GO:0030501 P positive regulation of bone mineralization
GO:0030509 P BMP signaling pathway
GO:0030513 P positive regulation of BMP signaling pathway
GO:0032924 P activin receptor signaling pathway
GO:0036122 F BMP binding
GO:0042127 P regulation of cell population proliferation
GO:0043025 C neuronal cell body
GO:0044214 C spanning component of plasma membrane
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045906 P negative regulation of vasoconstriction
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048286 P lung alveolus development
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0060041 P retina development in camera-type eye
GO:0060173 P limb development
GO:0060350 P endochondral bone morphogenesis
GO:0060836 P lymphatic endothelial cell differentiation
GO:0060840 P artery development
GO:0060841 P venous blood vessel development
GO:0061036 P positive regulation of cartilage development
GO:0061298 P retina vasculature development in camera-type eye
GO:0071773 P cellular response to BMP stimulus
GO:0072577 P endothelial cell apoptotic process
GO:0097481 C postsynaptic density
GO:0098821 F BMP receptor activity
GO:1902731 P negative regulation of chondrocyte proliferation
GO:2000279 P negative regulation of DNA biosynthetic process
FPKM:2.32 TPM:3.09
1040 A_BomoN4EE_TR100587_c0_g1_i2
2346bp
 PREDICTED:_probable_serine/threonine-protein_kinase_DDB_G0278901_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001707 P mesoderm formation
GO:0001893 P maternal placenta development
GO:0001935 P endothelial cell proliferation
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0001946 P lymphangiogenesis
GO:0001974 P blood vessel remodeling
GO:0002063 P chondrocyte development
GO:0003085 P negative regulation of systemic arterial blood pressure
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004675 F transmembrane receptor protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007178 P transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0007420 P brain development
GO:0009267 P cellular response to starvation
GO:0009925 C basal plasma membrane
GO:0009952 P anterior/posterior pattern specification
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0010634 P positive regulation of epithelial cell migration
GO:0010862 P positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0014916 P regulation of lung blood pressure
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016324 C apical plasma membrane
GO:0016362 F activin receptor activity, type II
GO:0016740 F transferase activity
GO:0019838 F growth factor binding
GO:0023014 P signal transduction
GO:0030166 P proteoglycan biosynthetic process
GO:0030308 P negative regulation of cell growth
GO:0030425 C dendrite
GO:0030501 P positive regulation of bone mineralization
GO:0030509 P BMP signaling pathway
GO:0030513 P positive regulation of BMP signaling pathway
GO:0032924 P activin receptor signaling pathway
GO:0036122 F BMP binding
GO:0042127 P regulation of cell population proliferation
GO:0043025 C neuronal cell body
GO:0044214 C spanning component of plasma membrane
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045906 P negative regulation of vasoconstriction
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048286 P lung alveolus development
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0060041 P retina development in camera-type eye
GO:0060173 P limb development
GO:0060350 P endochondral bone morphogenesis
GO:0060836 P lymphatic endothelial cell differentiation
GO:0060840 P artery development
GO:0060841 P venous blood vessel development
GO:0061036 P positive regulation of cartilage development
GO:0061298 P retina vasculature development in camera-type eye
GO:0071773 P cellular response to BMP stimulus
GO:0072577 P endothelial cell apoptotic process
GO:0097481 C postsynaptic density
GO:0098821 F BMP receptor activity
GO:1902731 P negative regulation of chondrocyte proliferation
GO:2000279 P negative regulation of DNA biosynthetic process
FPKM:0.00 TPM:0.00
1041 A_BomoN4EE_TR100587_c0_g1_i3
1930bp
 PREDICTED:_probable_serine/threonine-protein_kinase_DDB_G0278901_[Bombyx_mori]
FPKM:0.48 TPM:0.64
1042 A_BomoN4EE_TR100588_c0_g1_i1
1811bp
 PREDICTED:_probable_tRNA_(uracil-O(2)-)-methyltransferase,_partial_[Bombyx_mori]
FPKM:5.00 TPM:6.66
1043 A_BomoN4EE_TR100588_c1_g1_i1
2092bp
 PREDICTED:_cyclin-H_[Amyelois_transitella]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005675 C transcription factor TFIIH holo complex
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070985 C transcription factor TFIIK complex
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
FPKM:25.54 TPM:34.02
1044 A_BomoN4EE_TR100589_c1_g1_i1
651bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.98 TPM:1.31
1045 A_BomoN4EE_TR100589_c1_g1_i2
721bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.41 TPM:0.54
1046 A_BomoN4EE_TR10058_c0_g1_i1
297bp
 PREDICTED:_zonadhesin-like_isoform_X1_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:0.27 TPM:0.36
1047 A_BomoN4EE_TR100590_c0_g1_i1
8560bp
 PREDICTED:_protein_slit_isoform_X2_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0003151 P outflow tract morphogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007432 P salivary gland boundary specification
GO:0007502 P digestive tract mesoderm development
GO:0007509 P mesoderm migration involved in gastrulation
GO:0008078 P mesodermal cell migration
GO:0008201 F heparin binding
GO:0008347 P glial cell migration
GO:0008406 P gonad development
GO:0010632 P regulation of epithelial cell migration
GO:0016199 P axon midline choice point recognition
GO:0022409 P positive regulation of cell-cell adhesion
GO:0030154 P cell differentiation
GO:0030182 P neuron differentiation
GO:0031012 C extracellular matrix
GO:0035050 P embryonic heart tube development
GO:0035385 P Roundabout signaling pathway
GO:0046331 P lateral inhibition
GO:0048495 F Roundabout binding
GO:0048813 P dendrite morphogenesis
GO:0048846 P axon extension involved in axon guidance
GO:0050770 P regulation of axonogenesis
GO:0050929 P induction of negative chemotaxis
GO:0071666 C Slit-Robo signaling complex
GO:2000274 P regulation of epithelial cell migration, open tracheal system
FPKM:23.15 TPM:30.84
1048 A_BomoN4EE_TR100590_c0_g1_i2
8632bp
 PREDICTED:_protein_slit_isoform_X1_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0003151 P outflow tract morphogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007432 P salivary gland boundary specification
GO:0007502 P digestive tract mesoderm development
GO:0007509 P mesoderm migration involved in gastrulation
GO:0008078 P mesodermal cell migration
GO:0008201 F heparin binding
GO:0008347 P glial cell migration
GO:0008406 P gonad development
GO:0010632 P regulation of epithelial cell migration
GO:0016199 P axon midline choice point recognition
GO:0022409 P positive regulation of cell-cell adhesion
GO:0030154 P cell differentiation
GO:0030182 P neuron differentiation
GO:0031012 C extracellular matrix
GO:0035050 P embryonic heart tube development
GO:0035385 P Roundabout signaling pathway
GO:0046331 P lateral inhibition
GO:0048495 F Roundabout binding
GO:0048813 P dendrite morphogenesis
GO:0048846 P axon extension involved in axon guidance
GO:0050770 P regulation of axonogenesis
GO:0050929 P induction of negative chemotaxis
GO:0071666 C Slit-Robo signaling complex
GO:2000274 P regulation of epithelial cell migration, open tracheal system
FPKM:4.39 TPM:5.85
1049 A_BomoN4EE_TR100590_c0_g2_i1
326bp
 PREDICTED:_protein_slit_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1050 A_BomoN4EE_TR100591_c0_g1_i1
243bp
 Hdd23-like_protein_[Helicoverpa_armigera]
FPKM:0.96 TPM:1.28
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