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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1921 A_TrvaMG_comp12267_c0_seq1
375bp
FPKM:2.08 TPM:1.75
1922 A_TrvaMG_comp12269_c0_seq1
307bp
PREDICTED:_MFS-type_transporter_SLC18B1-like_[Papilio_machaon]
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:2.00 TPM:1.68
1923 A_TrvaMG_comp1227007_c0_seq1
255bp
hypothetical_protein_OsI_38072_[Oryza_sativa_Indica_Group]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006231 P dTMP biosynthetic process
GO:0006544 P glycine metabolic process
GO:0006545 P glycine biosynthetic process
GO:0006563 P L-serine metabolic process
GO:0006565 P L-serine catabolic process
GO:0006730 P one-carbon metabolic process
GO:0008732 F L-allo-threonine aldolase activity
GO:0009113 P purine nucleobase biosynthetic process
GO:0016597 F amino acid binding
GO:0016740 F transferase activity
GO:0019264 P glycine biosynthetic process from serine
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0046653 P tetrahydrofolate metabolic process
GO:0046655 P folic acid metabolic process
GO:0051262 P protein tetramerization
GO:0051289 P protein homotetramerization
GO:0070062 C extracellular exosome
GO:0070905 F serine binding
GO:1904482 P cellular response to tetrahydrofolate
FPKM:1.21 TPM:1.02
1924 A_TrvaMG_comp1227131_c0_seq1
247bp
hypothetical_protein_[Faecalibacterium_prausnitzii]
FPKM:0.98 TPM:0.83
1925 A_TrvaMG_comp12271_c0_seq1
265bp
FPKM:4.96 TPM:4.18
1926 A_TrvaMG_comp12272_c0_seq1
256bp
FPKM:2.70 TPM:2.27
1927 A_TrvaMG_comp122730_c0_seq1
405bp
FPKM:8.04 TPM:6.77
1928 A_TrvaMG_comp12276_c0_seq1
663bp
PREDICTED:_DNA-binding_protein_RFX2_[Bombyx_mori]
FPKM:1.32 TPM:1.11
1929 A_TrvaMG_comp1227757_c0_seq1
206bp
U6_snRNA_associated_Sm-like_protein_[Encephalitozoon_hellem_ATCC_50504]
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0033962 P P-body assembly
GO:0097526 C spliceosomal tri-snRNP complex
FPKM:1.69 TPM:1.43
1930 A_TrvaMG_comp12277_c0_seq1
1165bp
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101741510_[Bombyx_mori]
FPKM:2.14 TPM:1.80
1931 A_TrvaMG_comp12277_c1_seq1
451bp
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101741510_[Bombyx_mori]
FPKM:2.26 TPM:1.91
1932 A_TrvaMG_comp122790_c0_seq1
723bp
FPKM:3.70 TPM:3.12
1933 A_TrvaMG_comp1227930_c0_seq1
277bp
PREDICTED:_uncharacterized_protein_LOC105842098_[Bombyx_mori]
FPKM:1.00 TPM:0.84
1934 A_TrvaMG_comp122797_c0_seq1
219bp
FPKM:2.31 TPM:1.94
1935 A_TrvaMG_comp12279_c0_seq1
514bp
hypothetical_protein_PVMG_01665_[Plasmodium_vivax_Mauritania_I]
FPKM:2.12 TPM:1.79
1936 A_TrvaMG_comp12279_c1_seq1
582bp
FPKM:1.14 TPM:0.96
1937 A_TrvaMG_comp12280_c0_seq1
1076bp
cellular_retinaldehyde-binding_protein_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0007040 P lysosome organization
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
FPKM:1.09 TPM:0.92
1938 A_TrvaMG_comp12280_c1_seq1
330bp
PREDICTED:_cellular_retinaldehyde-binding_protein_isoform_X1_[Bombyx_mori]
FPKM:2.43 TPM:2.05
1939 A_TrvaMG_comp122819_c0_seq1
527bp
protein_iolH_[Aneurinibacillus_tyrosinisolvens]
FPKM:8.60 TPM:7.24
1940 A_TrvaMG_comp1228302_c0_seq1
253bp
FPKM:0.93 TPM:0.78
1941 A_TrvaMG_comp1228303_c0_seq1
205bp
FPKM:1.15 TPM:0.97
1942 A_TrvaMG_comp12283_c0_seq1
273bp
PREDICTED:_histidine--tRNA_ligase,_cytoplasmic_isoform_X1_[Papilio_machaon]
GO:0003746 F translation elongation factor activity
GO:0005853 C eukaryotic translation elongation factor 1 complex
GO:0006412 P translation
GO:0006414 P translational elongation
FPKM:1.54 TPM:1.30
1943 A_TrvaMG_comp12284_c0_seq1
285bp
hypothetical_protein_[Bosea_vaviloviae]
FPKM:1.40 TPM:1.18
1944 A_TrvaMG_comp12286_c0_seq1
270bp
3-deoxy-manno-octulosonate_cytidylyltransferase_[Capnocytophaga_sp._oral_taxon_863]
FPKM:2.38 TPM:2.00
1945 A_TrvaMG_comp12287_c0_seq1
2154bp
putative_ubiquitin-protein_ligase_BRE1_[Danaus_plexippus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006306 P DNA methylation
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016032 P viral process
GO:0016887 F ATP hydrolysis activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045898 P regulation of RNA polymerase II transcription preinitiation complex assembly
FPKM:2.27 TPM:1.91
1946 A_TrvaMG_comp12287_c1_seq1
1407bp
FPKM:1.27 TPM:1.07
1947 A_TrvaMG_comp1228890_c0_seq1
223bp
peptidase_S8_and_S53_precursor_[Micromonas_sp._RCC299]
FPKM:1.31 TPM:1.10
1948 A_TrvaMG_comp12288_c0_seq1
400bp
PREDICTED:_zinc_finger_protein_35_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:1.74 TPM:1.46
1949 A_TrvaMG_comp12288_c1_seq1
398bp
PREDICTED:_zinc_finger_protein_35_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.38 TPM:2.00
1950 A_TrvaMG_comp12289_c0_seq1
455bp
FPKM:2.03 TPM:1.71
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