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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1891 A_TrvaMG_comp12245_c0_seq1
226bp
FPKM:4.62 TPM:3.89
1892 A_TrvaMG_comp12245_c1_seq1
434bp
FPKM:2.07 TPM:1.75
1893 A_TrvaMG_comp1224618_c0_seq1
220bp
PREDICTED:_E3_ubiquitin-protein_ligase_UHRF1-like_isoform_X2_[Bombyx_mori]
FPKM:1.37 TPM:1.15
1894 A_TrvaMG_comp1224685_c0_seq1
218bp
FPKM:1.41 TPM:1.18
1895 A_TrvaMG_comp12246_c0_seq1
292bp
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737263_[Bombyx_mori]
FPKM:2.00 TPM:1.68
1896 A_TrvaMG_comp12247_c0_seq1
473bp
Uncharacterized_protein_OBRU01_23712,_partial_[Operophtera_brumata]
FPKM:1.34 TPM:1.13
1897 A_TrvaMG_comp12248_c0_seq1
735bp
PREDICTED:_uncharacterized_protein_LOC106142812_[Amyelois_transitella]
FPKM:1.21 TPM:1.02
1898 A_TrvaMG_comp122491_c0_seq1
879bp
PREDICTED:_uncharacterized_protein_LOC101736794_isoform_X1_[Bombyx_mori]
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005634 C nucleus
GO:0006401 P RNA catabolic process
GO:0032299 C ribonuclease H2 complex
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:6.40 TPM:5.38
1899 A_TrvaMG_comp1224941_c0_seq1
217bp
PREDICTED:_probable_G-protein_coupled_receptor_179,_partial_[Amyelois_transitella]
FPKM:1.43 TPM:1.20
1900 A_TrvaMG_comp12249_c0_seq1
470bp
FPKM:1.45 TPM:1.22
1901 A_TrvaMG_comp1225090_c0_seq1
234bp
FPKM:1.14 TPM:0.96
1902 A_TrvaMG_comp12250_c0_seq1
246bp
FPKM:2.99 TPM:2.51
1903 A_TrvaMG_comp12251_c0_seq1
245bp
FPKM:2.35 TPM:1.98
1904 A_TrvaMG_comp12252_c0_seq1
282bp
hypothetical_protein_[Thalassotalea_sp._ND16A]
FPKM:1.91 TPM:1.61
1905 A_TrvaMG_comp12253_c0_seq1
511bp
FPKM:1.54 TPM:1.30
1906 A_TrvaMG_comp12254_c0_seq1
236bp
PREDICTED:_zinc_finger_protein_569-like_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.97 TPM:2.50
1907 A_TrvaMG_comp12255_c0_seq1
366bp
FPKM:1.73 TPM:1.46
1908 A_TrvaMG_comp12256_c0_seq1
244bp
PREDICTED:_protein_IMPACT-like_[Papilio_machaon]
FPKM:1.36 TPM:1.14
1909 A_TrvaMG_comp12256_c1_seq1
220bp
uncharacterized_protein_LOC767623_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001933 P negative regulation of protein phosphorylation
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0007399 P nervous system development
GO:0030154 P cell differentiation
GO:0031333 P negative regulation of protein-containing complex assembly
GO:0031953 P negative regulation of protein autophosphorylation
GO:0034198 P cellular response to amino acid starvation
GO:0042149 P cellular response to glucose starvation
GO:0045666 P positive regulation of neuron differentiation
GO:0060548 P negative regulation of cell death
GO:0060733 P GCN2-mediated signaling
GO:0070301 P cellular response to hydrogen peroxide
GO:0071264 P positive regulation of translational initiation in response to starvation
GO:0071468 P cellular response to acidic pH
GO:0071494 P cellular response to UV-C
GO:0072755 P cellular response to benomyl
GO:0097201 P negative regulation of transcription from RNA polymerase II promoter in response to stress
GO:1990138 P neuron projection extension
GO:1990253 P cellular response to leucine starvation
FPKM:3.19 TPM:2.68
1910 A_TrvaMG_comp12257_c0_seq1
249bp
FPKM:2.89 TPM:2.44
1911 A_TrvaMG_comp122589_c0_seq1
2325bp
PREDICTED:_SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0021882 P obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
FPKM:4.84 TPM:4.08
1912 A_TrvaMG_comp12258_c0_seq1
531bp
hypothetical_protein_KGM_21041_[Danaus_plexippus]
FPKM:1.94 TPM:1.64
1913 A_TrvaMG_comp122590_c0_seq1
569bp
FPKM:2.65 TPM:2.23
1914 A_TrvaMG_comp12259_c0_seq1
229bp
PREDICTED:_uncharacterized_protein_LOC101738839_isoform_X1_[Bombyx_mori]
FPKM:2.83 TPM:2.38
1915 A_TrvaMG_comp12259_c1_seq1
1052bp
PREDICTED:_uncharacterized_protein_LOC101738839_isoform_X1_[Bombyx_mori]
FPKM:2.17 TPM:1.83
1916 A_TrvaMG_comp1226105_c0_seq1
201bp
hypothetical_protein_FC43_GL000905_[Lactobacillus_ingluviei_DSM_15946]
FPKM:1.85 TPM:1.55
1917 A_TrvaMG_comp12261_c0_seq1
225bp
FPKM:0.85 TPM:0.72
1918 A_TrvaMG_comp12262_c0_seq1
246bp
PREDICTED:_AMP_deaminase_2-like_[Amyelois_transitella]
GO:0003876 F AMP deaminase activity
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
FPKM:1.99 TPM:1.68
1919 A_TrvaMG_comp12265_c0_seq1
357bp
FPKM:2.11 TPM:1.78
1920 A_TrvaMG_comp12266_c0_seq1
326bp
hypothetical_protein_RR46_14281_[Papilio_xuthus]
FPKM:2.67 TPM:2.25
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