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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1351 A_TrvaMG_comp11894_c0_seq1
1668bp
PREDICTED:_uncharacterized_protein_LOC106129136_[Amyelois_transitella]
GO:0003824 F catalytic activity
GO:0004556 F alpha-amylase activity
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0043169 F cation binding
GO:0046872 F metal ion binding
FPKM:2.03 TPM:1.71
1352 A_TrvaMG_comp11894_c1_seq1
415bp
PREDICTED:_4F2_cell-surface_antigen_heavy_chain-like_[Bombyx_mori]
FPKM:3.28 TPM:2.76
1353 A_TrvaMG_comp118956_c0_seq1
769bp
PREDICTED:_transmembrane_protein_131_homolog_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:8.19 TPM:6.89
1354 A_TrvaMG_comp11895_c0_seq1
497bp
FPKM:3.12 TPM:2.62
1355 A_TrvaMG_comp11896_c0_seq1
468bp
FPKM:2.92 TPM:2.46
1356 A_TrvaMG_comp1189706_c0_seq1
210bp
FPKM:1.59 TPM:1.34
1357 A_TrvaMG_comp118978_c0_seq1
653bp
FPKM:6.79 TPM:5.72
1358 A_TrvaMG_comp11897_c0_seq1
1066bp
hypothetical_protein_KGM_00401_[Danaus_plexippus]
GO:0000347 C THO complex
GO:0003674 F molecular_function
GO:0006406 P mRNA export from nucleus
GO:0008283 P cell population proliferation
GO:0009408 P response to heat
FPKM:3.18 TPM:2.67
1359 A_TrvaMG_comp118983_c0_seq1
311bp
FPKM:6.44 TPM:5.42
1360 A_TrvaMG_comp11898_c0_seq1
407bp
FPKM:3.75 TPM:3.15
1361 A_TrvaMG_comp118995_c0_seq1
720bp
FPKM:6.36 TPM:5.36
1362 A_TrvaMG_comp11899_c0_seq1
915bp
Dystrophin_[Operophtera_brumata]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007274 P neuromuscular synaptic transmission
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008092 F cytoskeletal protein binding
GO:0008270 F zinc ion binding
GO:0008307 F structural constituent of muscle
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0030010 P establishment of cell polarity
GO:0042383 C sarcolemma
GO:0045202 C synapse
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0046928 P regulation of neurotransmitter secretion
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050699 F WW domain binding
FPKM:2.89 TPM:2.43
1363 A_TrvaMG_comp1190009_c0_seq1
230bp
FPKM:1.20 TPM:1.01
1364 A_TrvaMG_comp1190053_c0_seq1
202bp
PREDICTED:_chaoptin_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.81 TPM:1.53
1365 A_TrvaMG_comp1190093_c0_seq1
265bp
PREDICTED:_putative_tRNA_pseudouridine_synthase_Pus10_[Python_bivittatus]
FPKM:1.10 TPM:0.93
1366 A_TrvaMG_comp11900_c0_seq1
305bp
FPKM:3.85 TPM:3.24
1367 A_TrvaMG_comp11901_c0_seq1
540bp
PREDICTED:_histone-lysine_N-methyltransferase,_H3_lysine-79_specific_isoform_X4_[Bombyx_mori]
FPKM:3.09 TPM:2.60
1368 A_TrvaMG_comp11902_c0_seq1
1993bp
PREDICTED:_beta-secretase_1-like_[Bombyx_mori]
GO:0001540 F amyloid-beta binding
GO:0004175 F endopeptidase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005771 C multivesicular body
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006508 P proteolysis
GO:0006509 P membrane protein ectodomain proteolysis
GO:0008233 F peptidase activity
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019899 F enzyme binding
GO:0030163 P protein catabolic process
GO:0030424 C axon
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0050435 P amyloid-beta metabolic process
FPKM:2.98 TPM:2.51
1369 A_TrvaMG_comp1190430_c0_seq1
233bp
General_transcription_factor_3C_polypeptide_1_[Papilio_xuthus]
FPKM:1.54 TPM:1.29
1370 A_TrvaMG_comp119043_c0_seq1
221bp
FPKM:0.45 TPM:0.38
1371 A_TrvaMG_comp11904_c0_seq1
427bp
FPKM:4.14 TPM:3.49
1372 A_TrvaMG_comp119055_c0_seq1
1215bp
PREDICTED:_PIH1_domain-containing_protein_1-like_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:7.88 TPM:6.63
1373 A_TrvaMG_comp1190595_c0_seq1
220bp
ATPase_[Capnocytophaga_canimorsus]
FPKM:1.37 TPM:1.15
1374 A_TrvaMG_comp11905_c0_seq1
1274bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X4_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
FPKM:3.35 TPM:2.82
1375 A_TrvaMG_comp1190627_c0_seq1
220bp
Zinc_finger_protein_729,_partial_[Stegodyphus_mimosarum]
FPKM:0.91 TPM:0.77
1376 A_TrvaMG_comp1190699_c0_seq1
248bp
FPKM:1.30 TPM:1.09
1377 A_TrvaMG_comp119079_c0_seq1
355bp
PREDICTED:_DNA-directed_RNA_polymerases_I,_II,_and_III_subunit_RPABC4_[Plutella_xylostella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001054 F RNA polymerase I activity
GO:0001055 F RNA polymerase II activity
GO:0001056 F RNA polymerase III activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005665 C RNA polymerase II, core complex
GO:0005666 C RNA polymerase III complex
GO:0005736 C RNA polymerase I complex
GO:0005829 C cytosol
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006356 P regulation of transcription by RNA polymerase I
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006383 P transcription by RNA polymerase III
GO:0008270 F zinc ion binding
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010467 P gene expression
GO:0031047 P gene silencing by RNA
GO:0032481 P positive regulation of type I interferon production
GO:0035019 P somatic stem cell population maintenance
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0046872 F metal ion binding
GO:0050434 P positive regulation of viral transcription
FPKM:11.11 TPM:9.35
1378 A_TrvaMG_comp11907_c0_seq1
773bp
PREDICTED:_small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
FPKM:2.27 TPM:1.91
1379 A_TrvaMG_comp11908_c0_seq1
2110bp
PREDICTED:_WD_repeat-containing_protein_37_[Amyelois_transitella]
FPKM:1.90 TPM:1.60
1380 A_TrvaMG_comp11909_c0_seq1
765bp
PREDICTED:_uncharacterized_protein_LOC106143184_[Amyelois_transitella]
FPKM:2.20 TPM:1.85
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