SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp11907_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_small_subunit_processome_component_20_homolog_[Bombyx_mori]
Ontology
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
Transcript
Level		FPKM:2.27 TPM:1.91
ORF EntryO_TrvaMG488_3prime_partial:A_TrvaMG_comp11907_c0_seq1
Sequence
(Nucleotide)
GACATTCAACTGAACATCAGAAACAGTTGACTCGGATCATCATTGGAATTATCGATGCCT
TTCATTTCGACTTTTCAAAGGCAAAAAAATATTGAACTTCCTAAAGCGCTAGTAATGAAT
ATTAAGAATAAAGTGCGCATTGAAGACGCGAAAAAGCAAGTTGAAGTCAATAAAGACGAA
GACAATGAAATTGATGAAACAGAAACTGGTTTAGAAAACGAACATAAAACTGATGAGAAT
GATATAGAAATGGAATTGAAAGCTGCTGATGATGAAGTTGATAATGAAGAAGTTCCTAAA
GAAATATCCAGTGCACCTGCTTTTGAAAGAATCACGAGCGTATCACCATCGGTTGCTAAG
AGAATCATCAAATCATTGACATCTGGACTACTGCCTCAGTTGAATAGGTCCATAGGTAAA
ATGACAGATCACGAAGAATCTCATAAAGTGAATAGGCGTCGAAATGGCATCGAAAGACAA
GAGGAAGACATGCTAAGGGTTCCTATAGCTCTAGCGCTTGTTAAACTATTACAGAGATTA
CCTGGTGCTTTGTTGGACAATCAGTTACCTGGCATCATCATAAAACTGTGTTCGTTCCTA
AAATCTCCTCTAAAACAAGTCCGCATAGCAGCGCGTGATATCGTCAAAAAAGTCATGATC
ACAGTCGGTACAGATTACTTAGGCGTTTTCTTGGAGCATCTAACTCTCTTATTAACAAGA
GGATTCCAAGTACACGTATTAGTCGCAACAGTTCATACCGTACTTGACGCTTT
(773 bp)

- SilkBase 1999-2023 -