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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
931 A_BomoSK_comp10457_c0_seq1
554bp
FPKM:4.92 TPM:4.95
932 A_BomoSK_comp104592_c0_seq1
670bp
 PREDICTED:_uncharacterized_protein_LOC106131874_[Amyelois_transitella]
FPKM:5.02 TPM:5.05
933 A_BomoSK_comp10459_c0_seq1
3714bp
 PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:3.88 TPM:3.90
934 A_BomoSK_comp10459_c0_seq2
1724bp
 PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
FPKM:1.96 TPM:1.97
935 A_BomoSK_comp104606_c0_seq1
1133bp
 PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
FPKM:4.88 TPM:4.90
936 A_BomoSK_comp10460_c0_seq1
781bp
FPKM:7.20 TPM:7.24
937 A_BomoSK_comp10461_c0_seq1
1709bp
 PREDICTED:_la-related_protein_7_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006396 P RNA processing
GO:0030529 C ribonucleoprotein complex
FPKM:6.20 TPM:6.24
938 A_BomoSK_comp10461_c1_seq1
349bp
 DNA_helicase_[Chryseobacterium_sp._CF365]
FPKM:2.44 TPM:2.45
939 A_BomoSK_comp10462_c0_seq1
635bp
FPKM:1.01 TPM:1.01
940 A_BomoSK_comp10462_c1_seq1
754bp
FPKM:1.99 TPM:2.00
941 A_BomoSK_comp10462_c2_seq1
233bp
FPKM:0.00 TPM:0.00
942 A_BomoSK_comp10463_c0_seq1
3785bp
 PREDICTED:_golgin_subfamily_A_member_5_[Amyelois_transitella]
GO:0000137 C Golgi cis cisterna
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005794 C Golgi apparatus
GO:0005797 C Golgi medial cisterna
GO:0005801 C cis-Golgi network
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017137 F small GTPase binding
GO:0030133 C transport vesicle
GO:0030663 C COPI-coated vesicle membrane
GO:0030674 F protein-macromolecule adaptor activity
GO:0031985 C Golgi cisterna
GO:0042803 F protein homodimerization activity
GO:0048193 P Golgi vesicle transport
FPKM:5.14 TPM:5.17
943 A_BomoSK_comp10464_c0_seq1
2436bp
FPKM:5.12 TPM:5.15
944 A_BomoSK_comp10464_c1_seq1
1387bp
 TAR_DNA-binding_protein_43_[Operophtera_brumata]
FPKM:3.51 TPM:3.53
945 A_BomoSK_comp10464_c1_seq2
1308bp
 PREDICTED:_TAR_DNA-binding_protein_43-like_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
FPKM:5.92 TPM:5.95
946 A_BomoSK_comp104652_c0_seq1
311bp
FPKM:5.43 TPM:5.46
947 A_BomoSK_comp10465_c0_seq1
309bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:5.51 TPM:5.54
948 A_BomoSK_comp10465_c1_seq1
875bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:4.67 TPM:4.69
949 A_BomoSK_comp10465_c1_seq2
380bp
FPKM:0.00 TPM:0.00
950 A_BomoSK_comp10466_c0_seq1
250bp
FPKM:3.33 TPM:3.35
951 A_BomoSK_comp10466_c0_seq2
246bp
FPKM:1.76 TPM:1.77
952 A_BomoSK_comp10467_c0_seq1
2560bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_52_homolog_isoform_X1_[Amyelois_transitella]
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0010008 C endosome membrane
GO:0010668 P ectodermal cell differentiation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019905 F syntaxin binding
GO:0032456 P endocytic recycling
GO:0048471 C perinuclear region of cytoplasm
GO:0048611 P embryonic ectodermal digestive tract development
GO:0055037 C recycling endosome
GO:1990745 C EARP complex
FPKM:5.92 TPM:5.95
953 A_BomoSK_comp104684_c0_seq1
224bp
FPKM:1.24 TPM:1.24
954 A_BomoSK_comp10468_c0_seq1
1901bp
FPKM:4.24 TPM:4.26
955 A_BomoSK_comp10469_c0_seq1
2949bp
 PREDICTED:_sodium-independent_sulfate_anion_transporter_[Papilio_xuthus]
GO:0005254 F chloride channel activity
GO:0005654 C nucleoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0008509 F anion transmembrane transporter activity
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0042391 P regulation of membrane potential
GO:0043231 C intracellular membrane-bounded organelle
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:1.01 TPM:1.02
956 A_BomoSK_comp10469_c0_seq2
2615bp
 hypothetical_protein_KGM_04995_[Danaus_plexippus]
GO:0005254 F chloride channel activity
GO:0005654 C nucleoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0008509 F anion transmembrane transporter activity
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0042391 P regulation of membrane potential
GO:0043231 C intracellular membrane-bounded organelle
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:4.33 TPM:4.36
957 A_BomoSK_comp104703_c0_seq1
816bp
 PREDICTED:_exosome_complex_component_RRP46_[Amyelois_transitella]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006401 P RNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
FPKM:5.28 TPM:5.31
958 A_BomoSK_comp104709_c0_seq1
512bp
 PREDICTED:_zinc_finger_C4H2_domain-containing_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007528 P neuromuscular junction development
GO:0016020 C membrane
GO:0021522 P spinal cord motor neuron differentiation
GO:0030054 C cell junction
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046872 F metal ion binding
FPKM:6.25 TPM:6.29
959 A_BomoSK_comp10470_c0_seq1
405bp
 PREDICTED:_uncharacterized_protein_LOC105841570_[Bombyx_mori]
FPKM:9.59 TPM:9.65
960 A_BomoSK_comp10470_c1_seq1
663bp
FPKM:16.69 TPM:16.79
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