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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp10459_c0_seq1
Scaffold_idBomo_Scaf018
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.88 TPM:3.90
ORF EntryO_BomoSK7236_complete:A_BomoSK_comp10459_c0_seq1
Sequence
(Nucleotide)
GTTTTAATGTTGTCCCCGGGCCGCTACAGGCCCAGGCGCTGCGGTGTGCGGCGCGGGGTG
CCCAGCCCCGGGGTGGCCACCTCCTGCTTCACGGGAACGTCTTCGTCTTTCTTCTTGCGA
TCTTCTGCCATTTTGGCCTCGGCCTCCTTCATCTCTTCCTCCATGCGTTGGAGGTGGACC
GCTGCTTCTTTACGCTTGTCTCGATTCGATTTGCCGGTCTCCTTGACGGAGAAGAACATG
GGCCCCAGCTCGGCCAGCCAGCGCGCGTCCACGGCGGTGACGCAGTGCATGTACTCGCGC
GCCGTCATGGTGAGCTCGTGGTACACCACGTAGTCGGGGCTGCAGCCCAGCCCGAACAGC
GCCGAGGTGGGGTGCAGGTGGCACGGCATGCCGGTGCGGCAGTTCACGTACTCGCCGATG
CCCTTCAGCCGCGCCGCCTGCTGGAAGTAAGCTGAACAGATGCATTTCCTGACGGTGTCC
CAGTCGGTGCCGCAGGACACGAGCGGCAGCCGCTGCTGTTGCAGAATGTCCTTCAGCTGC
TGGCGAACCTCGCGCACTTTCCTCATCGCCTTCGCGTGAACGAAGTGCTCCGTGCACCAC
TGACTGGAGTAGTTGTTTGATTTCCACTGGTTGTACAAGTGTAGGAGGGTCAGGTGATCG
GATTCGGGGACTTGGAATTTCTCTTTGACTGCGTCGGCTTCTTCCTCGCGACCTTGAGGA
CGGTAGAAGACTGAAGGCACCGACAGCATCGACACGATGATGAGCACCTCGGCGCTGCAG
CCCATGTCCGCGGCCACGATGAGCATGTGGCACTGCGCCGGGTCCAGCGGGAACTCCGCC
ATCTGCCGCCCGAGCGCCGTCAGCGAGCCCGTGCCGTCCAGCGCGCCCAGGATCCACAGC
TGGTACATCGAGTTCAGGATCGTGTCCTGTGGTGGGGGATCCATGAAGTGGAAGGCCAGT
AGGTCTTCAACGCCCAAGGACTTCAGCAACAGTACGGTGTTCGCCAGGTTCGTCCTCTGT
ATCTCCGGCACAGTAGACGCCAGCAGCTCGTGCTGGTACTGCCGCTGCGTGTACAGACAG
AAGGCCTTGCCCGGGCCGGTACGCCCGGCTCGGCCCGCCCGCTGCCGGGCGTTGGCCTGG
CTAACCGGATATATCTGCAAAGCGTCCATACCGATCCTCGGGTTGTAAACCTTCAGCTTA
CAATATCCGCAGTCTATGACGTACATGATCCCGTCCACGGTTAGTGACGTTTCTGCTATA
TTGGTGGCGACGATACACTTCCTCTGTCCGGGCGGCGCTCGCTGGAATATCTTCGCCTGC
AAGTCAGCGGGGAGCTGAGAGTATATCGGCAGGACGGTCAGGGGGGGCGCGTTGTCTAAA
TCGCCCAGTCTTTCTGTTAATACCTCGCACGTAACTTCGATGTCTTCCTGACCAGGCATG
AATATCAGAATGTCGCCCTCGTCTGGCTGCAGATGAATTTGTAAAGCCTGTTTGACAGCT
CCGTCAACGTAATCCTCGCACGGGTTCTTCGAGAAGAACGTCTCCACGGGGAAGGTCCTG
CCGGGGATGGTGAAAGTCGGCACGTTACCGAAAAACGTCGAAAACTTAGTCGAATCCATC
GTGGCTGACGTGACGATCAACTTCAGGTCGGAGCGACGAGCTACCACCTCCCGCAGCAGC
CCGAAGAGCATGTCGGTGGACAGTGAGCGCTCGTGAGCCTCGTCCATGATGATGGCGGAG
TAGTTGTCCAGGTCCGGCTCCCGGAGCCCCTCGCGGAGCAGGATGCCGTCCGTCATGTAC
TTGATGACCGTGCTCGGGGATGTGCAGTCTTCGAACCGTATGGCGTACCCGACCTCGTCA
CCGAGGCGCGTGTGCATCTCGTCGGAGACCCGCTTGGCGACGGACATGGCGGCGACGCGG
CGCGGCTGCGTGCACCCGATCATGCCGAGCCGGCTGAACCCCTCCTCGTGCAGGTACTGG
GTGAGCTGCGTGGTCTTGCCGCTGCCAGTCTCGCCAACTATGATGACGACGTTGTTCTCC
CGGATGACCTGCAGCAGCTCCTCGCGGACGGCGAACACGGGCAGGTAGCGCCTCTGTTCC
GATATGGACATCTTCTTCACGAAGTCCGACTTCGATTCCGGTTCCTGAGCTTCTTTATCT
AAATGCTCCGCGTATTTGTACGCTTCTCTTGTAGGGCCATCTTCGAGTTCTTCTTTTTCC
CTCTGTATTCCCATGATGTTGCCTAGTTTGGTTCCCTCTAATTTCCAATGTTTCTTCTGA
GCTTTCCGTCTCTCCTTTTGTTCTCGGAATGCTTTCACTAAGGCCGAGCCTTTTCGTGCG
TTTACCGCCATATCCGACGTAGGATCTTTTACCGGTATCACGGGCTCCGGCTGCTTCGTG
AATATGATTCTTCCGTCGAGGAATGGAGGCACGATGTTGTGCACCAGCAGGTGGACGCGG
TCAACGCTCTCCTCATCCATATCGTTGTTGACGTTGATGGCGTGGACAACCCCGCTCGTC
AGCATCCTGTTCCGTTCCCAGAGGTCGTTGTCCTTGTCTATTTGCTGTCTCTGAGCGGAC
ACCTTCCTGTTGCGACGTTTCTCTATTTGTTCCTCCTTGCGCGCCATGTACTCCGCGCTC
GTGTTGCCGAACGGATCCGATTCATCGGCTTCACCTTCTCCCATGTTGTACCAATCTCTA
TCTAATTTCTTTTCTGCTTCTTGCCAATCAGGATCATCTACATCTACTAATCTTCGAGAG
CTCGCAAACTTATGCGGGGTGGCCCTAGGAGTGTTCTCATACGGTCTGCCTTTATAATCC
CGCATTGTTCTATTGCCTCTTTCGCTACGCTGATCATAGTCCCTAGGCAGAGGTGTTGGA
AAGTCCCAGCTGGATTTGCGTACTGTAGACCTTGGGTCATCATCATCATCATCCCAGGCA
GTCTTTTCTGTTGGCTTTAGAACACTAATACTTGGGGTTTTGGGTTCATCTTTAAATTTA
GGATTGTAATAACTTCTTCTTGAACTACTCCTTTCACTATCACGATCTCTTCTATCTCTG
TCACTTCTATTTCTATCCTTATCTCTACTGTCCCCATCCCTATCTCGCCTCCTATCTCTA
TCCTGATTCCTTCTGTAGTCATTGTTCCTTCTATCGCGTCTGTGATAATGACGATAATAA
TCATCATCATCTTTGGCCTGTGTTTTCTTTTCTTCCTGAGTAGAATTGTGTACACCTTTT
TCCTTTACTTGCTTTTCTCTTTTCTGCATCCGCTCAATGAGTCTTTCCCGTGCCTGCTCT
GATATACCGCCAGTATAGGTGGGGGTTTCTTCATTGTGCTTTCTGTATTTACGTTCTTTC
ACCACATTATCCACATTCGTTCCTTCGTCCTCGTTTTCTTCGTTTTGGAACGATATAAGG
CGATTCTGCTTACGTTTCGCAGCAGCCAGTTTATCGAGACCCAGTAAGGAAGGCTTGGCA
AATTGAAAATCTGCAGGTTTATCCTTTTGTCTTATGATTAAACCACCTGGGGTGTCACCA
GAAGTTCCCTCCAAACGATGGACATTTTCTTCGGGATCGGTCATCGTACAATTTGTTTAA
TGATTCTATAAATTATTTAGCTTAGATGTTTGTGTTTTGTGATTGATTTCACATGAGGTT
AATTTACTTTAAAACTTAAAATACAATTTCCCGTTTTTCGTAGGTAATGGAAAT
(3714 bp)

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