SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/49310
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
901 A_BomoSK_comp10444_c0_seq1
1043bp
 hypothetical_protein_KGM_11574_[Danaus_plexippus]
GO:0004623 F phospholipase A2 activity
GO:0005575 C cellular_component
GO:0006629 P lipid metabolic process
GO:0008970 F phospholipase A1 activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046470 P phosphatidylcholine metabolic process
GO:0052689 F carboxylic ester hydrolase activity
GO:0052739 F phosphatidylserine 1-acylhydrolase activity
GO:0052740 F 1-acyl-2-lysophosphatidylserine acylhydrolase activity
FPKM:2.98 TPM:3.00
902 A_BomoSK_comp10444_c0_seq2
652bp
 hypothetical_protein_KGM_11574_[Danaus_plexippus]
GO:0004623 F phospholipase A2 activity
GO:0005575 C cellular_component
GO:0006629 P lipid metabolic process
GO:0008970 F phospholipase A1 activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046470 P phosphatidylcholine metabolic process
GO:0052689 F carboxylic ester hydrolase activity
GO:0052739 F phosphatidylserine 1-acylhydrolase activity
GO:0052740 F 1-acyl-2-lysophosphatidylserine acylhydrolase activity
FPKM:3.10 TPM:3.12
903 A_BomoSK_comp10445_c0_seq1
790bp
FPKM:5.32 TPM:5.35
904 A_BomoSK_comp10445_c1_seq1
762bp
 hypothetical_protein_[Selenomonas_sp._AE3005]
FPKM:9.70 TPM:9.75
905 A_BomoSK_comp10446_c0_seq1
319bp
 PREDICTED:_proline-rich_protein_HaeIII_subfamily_1-like_[Rattus_norvegicus]
FPKM:10.15 TPM:10.21
906 A_BomoSK_comp10446_c0_seq2
420bp
 PREDICTED:_proline-rich_protein_HaeIII_subfamily_1-like_[Rattus_norvegicus]
FPKM:1.25 TPM:1.26
907 A_BomoSK_comp104470_c0_seq1
2778bp
 PREDICTED:_endoplasmic_reticulum-Golgi_intermediate_compartment_protein_2-like_isoform_X2_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0043231 C intracellular membrane-bounded organelle
FPKM:3.79 TPM:3.82
908 A_BomoSK_comp10447_c0_seq1
404bp
FPKM:2.60 TPM:2.62
909 A_BomoSK_comp10447_c1_seq1
388bp
FPKM:4.50 TPM:4.52
910 A_BomoSK_comp10447_c2_seq1
982bp
 hypothetical_protein_[Paramecium_tetraurelia_strain_d4-2]
FPKM:5.10 TPM:5.13
911 A_BomoSK_comp10448_c0_seq1
4049bp
 PREDICTED:_ATP-dependent_DNA_helicase_Q4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000405 F bubble DNA binding
GO:0000733 P obsolete DNA strand renaturation
GO:0001501 P skeletal system development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006284 P base-excision repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0008284 P positive regulation of cell population proliferation
GO:0009378 F four-way junction helicase activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0043140 F 3'-5' DNA helicase activity
GO:0043473 P pigmentation
GO:0045875 P negative regulation of sister chromatid cohesion
GO:0046872 F metal ion binding
GO:0048705 P skeletal system morphogenesis
FPKM:3.94 TPM:3.96
912 A_BomoSK_comp1044908_c0_seq1
287bp
 PREDICTED:_protein_Cep89_homolog_isoform_X3_[Bombyx_mori]
FPKM:1.11 TPM:1.12
913 A_BomoSK_comp10449_c0_seq1
431bp
 gamma-glutamyltransferase_[Bombyx_mori]
GO:0003840 F obsolete gamma-glutamyltransferase activity
GO:0006508 P proteolysis
GO:0006749 P glutathione metabolic process
GO:0008233 F peptidase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016787 F hydrolase activity
GO:0036374 F glutathione hydrolase activity
FPKM:1.62 TPM:1.63
914 A_BomoSK_comp10449_c1_seq1
380bp
 PREDICTED:_gamma-glutamyltransferase_isoform_X1_[Bombyx_mori]
GO:0003840 F obsolete gamma-glutamyltransferase activity
GO:0006508 P proteolysis
GO:0006749 P glutathione metabolic process
GO:0008233 F peptidase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016787 F hydrolase activity
GO:0036374 F glutathione hydrolase activity
FPKM:1.76 TPM:1.77
915 A_BomoSK_comp10450_c0_seq1
375bp
 PREDICTED:_uncharacterized_protein_LOC101746233_[Bombyx_mori]
FPKM:0.00 TPM:0.00
916 A_BomoSK_comp10450_c0_seq2
731bp
 PREDICTED:_uncharacterized_protein_LOC101746233_[Bombyx_mori]
FPKM:1.24 TPM:1.25
917 A_BomoSK_comp10451_c0_seq1
444bp
 zinc_finger_C4H2_domain-containing_protein-like_protein_[Sarcoptes_scabiei]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007528 P neuromuscular junction development
GO:0016020 C membrane
GO:0021522 P spinal cord motor neuron differentiation
GO:0030054 C cell junction
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046872 F metal ion binding
GO:0048665 P neuron fate specification
GO:0048666 P neuron development
FPKM:2.34 TPM:2.35
918 A_BomoSK_comp10451_c0_seq2
327bp
 PREDICTED:_zinc_finger_C4H2_domain-containing_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007528 P neuromuscular junction development
GO:0016020 C membrane
GO:0021522 P spinal cord motor neuron differentiation
GO:0030054 C cell junction
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046872 F metal ion binding
FPKM:6.17 TPM:6.21
919 A_BomoSK_comp10452_c0_seq1
229bp
FPKM:0.00 TPM:0.00
920 A_BomoSK_comp10452_c1_seq1
409bp
 PREDICTED:_protein_FAM111A-like_isoform_X1_[Stegastes_partitus]
FPKM:3.56 TPM:3.58
921 A_BomoSK_comp10453_c0_seq1
285bp
FPKM:8.47 TPM:8.52
922 A_BomoSK_comp10454_c0_seq1
922bp
 PREDICTED:_protein_tramtrack,_beta_isoform-like_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001709 P cell fate determination
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007298 P border follicle cell migration
GO:0007422 P peripheral nervous system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008360 P regulation of cell shape
GO:0016476 P regulation of embryonic cell shape
GO:0017053 C transcription repressor complex
GO:0030707 P ovarian follicle cell development
GO:0031208 F POZ domain binding
GO:0031987 P locomotion involved in locomotory behavior
GO:0035001 P dorsal trunk growth, open tracheal system
GO:0035147 P branch fusion, open tracheal system
GO:0035151 P regulation of tube size, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042675 P compound eye cone cell differentiation
GO:0042682 P regulation of compound eye cone cell fate specification
GO:0042803 F protein homodimerization activity
GO:0043388 P positive regulation of DNA binding
GO:0045467 P R7 cell development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046843 P dorsal appendage formation
GO:0046872 F metal ion binding
GO:0048053 P R1/R6 development
GO:0048666 P neuron development
GO:0048750 P compound eye corneal lens morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
GO:0060446 P branching involved in open tracheal system development
FPKM:1.45 TPM:1.46
923 A_BomoSK_comp10454_c1_seq1
1102bp
 PREDICTED:_uncharacterized_protein_LOC101744966,_partial_[Bombyx_mori]
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007464 P R3/R4 cell fate commitment
GO:0007526 P larval somatic muscle development
GO:0008406 P gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0016199 P axon midline choice point recognition
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031987 P locomotion involved in locomotory behavior
GO:0035167 P larval lymph gland hemopoiesis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045467 P R7 cell development
GO:0045476 P nurse cell apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
FPKM:0.71 TPM:0.72
924 A_BomoSK_comp10454_c1_seq2
1126bp
 PREDICTED:_uncharacterized_protein_LOC101744966,_partial_[Bombyx_mori]
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007464 P R3/R4 cell fate commitment
GO:0007526 P larval somatic muscle development
GO:0008406 P gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0016199 P axon midline choice point recognition
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031987 P locomotion involved in locomotory behavior
GO:0035167 P larval lymph gland hemopoiesis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045467 P R7 cell development
GO:0045476 P nurse cell apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
FPKM:1.16 TPM:1.17
925 A_BomoSK_comp104551_c0_seq1
391bp
 PREDICTED:_cysteine_and_histidine-rich_protein_1_homolog_[Plutella_xylostella]
FPKM:5.26 TPM:5.29
926 A_BomoSK_comp104552_c0_seq1
406bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:6.97 TPM:7.01
927 A_BomoSK_comp104553_c0_seq1
4757bp
 PREDICTED:_balbiani_ring_protein_3_isoform_X2_[Bombyx_mori]
GO:0005102 F signaling receptor binding
GO:0005179 F hormone activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006590 P thyroid hormone generation
GO:0009268 P response to pH
GO:0015705 P iodide transport
GO:0030878 P thyroid gland development
GO:0031641 P regulation of myelination
GO:0032403 F protein-containing complex binding
GO:0032496 P response to lipopolysaccharide
GO:0042403 P thyroid hormone metabolic process
GO:0042446 P hormone biosynthetic process
GO:0042803 F protein homodimerization activity
GO:0043168 F anion binding
GO:0043234 C protein-containing complex
GO:0045056 P transcytosis
GO:0048471 C perinuclear region of cytoplasm
GO:0051087 F chaperone binding
GO:0052689 F carboxylic ester hydrolase activity
FPKM:3.53 TPM:3.55
928 A_BomoSK_comp10455_c0_seq1
1273bp
 PREDICTED:_mitochondrial_ribosome-associated_GTPase_2-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005761 C mitochondrial ribosome
GO:0006417 P regulation of translation
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0042254 P ribosome biogenesis
GO:0044065 P regulation of respiratory system process
GO:0046872 F metal ion binding
GO:0070129 P regulation of mitochondrial translation
FPKM:7.40 TPM:7.45
929 A_BomoSK_comp10456_c0_seq1
679bp
 PREDICTED:_60S_ribosome_subunit_biogenesis_protein_NIP7_homolog_[Amyelois_transitella]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
FPKM:6.28 TPM:6.32
930 A_BomoSK_comp10456_c0_seq2
798bp
 PREDICTED:_60S_ribosome_subunit_biogenesis_protein_NIP7_homolog_[Amyelois_transitella]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
FPKM:1.40 TPM:1.41
previous next from show/49310

- SilkBase 1999-2023 -