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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
961 A_BomoSK_comp104710_c0_seq1
1916bp
 PREDICTED:_transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000125 C SAGA complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1904837 P beta-catenin-TCF complex assembly
FPKM:3.12 TPM:3.14
962 A_BomoSK_comp10471_c0_seq1
908bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106709673_[Papilio_machaon]
GO:0000151 C ubiquitin ligase complex
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032182 F ubiquitin-like protein binding
GO:0045116 P protein neddylation
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0097602 F cullin family protein binding
FPKM:5.23 TPM:5.26
963 A_BomoSK_comp10472_c0_seq1
398bp
 hypothetical_protein_WUBG_10210_[Wuchereria_bancrofti]
FPKM:3.48 TPM:3.50
964 A_BomoSK_comp10472_c1_seq1
221bp
 serpin-24_[Bombyx_mori]
FPKM:5.23 TPM:5.26
965 A_BomoSK_comp104734_c0_seq1
1830bp
FPKM:3.28 TPM:3.30
966 A_BomoSK_comp10473_c0_seq1
316bp
FPKM:1.31 TPM:1.31
967 A_BomoSK_comp10474_c0_seq1
1666bp
 hypothetical_protein_RR48_00532_[Papilio_machaon]
FPKM:4.67 TPM:4.70
968 A_BomoSK_comp1047510_c0_seq1
215bp
 ADP-heptose--LPS_heptosyltransferase_2_[Caedibacter_varicaedens]
FPKM:2.93 TPM:2.95
969 A_BomoSK_comp104757_c0_seq1
663bp
 PREDICTED:_radixin_[Amyelois_transitella]
FPKM:1.30 TPM:1.31
970 A_BomoSK_comp10475_c0_seq1
579bp
 putative_cuticle_protein_CPG51_[Bombyx_mori]
FPKM:2.59 TPM:2.60
971 A_BomoSK_comp10475_c0_seq2
380bp
 peptide_chain_release_factor_subunit_1_(aeRF-1)_[uncultured_archaeon_A07HB70]
FPKM:2.34 TPM:2.36
972 A_BomoSK_comp104769_c0_seq1
1412bp
 PREDICTED:_serine/threonine-protein_kinase_10_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0042801 F obsolete polo kinase kinase activity
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0046777 P protein autophosphorylation
GO:0070062 C extracellular exosome
GO:0071593 P lymphocyte aggregation
GO:2000401 P regulation of lymphocyte migration
FPKM:3.53 TPM:3.55
973 A_BomoSK_comp10476_c0_seq1
2196bp
 PREDICTED:_chaoptin_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016028 C rhabdomere
GO:0032528 P microvillus organization
GO:0035996 C rhabdomere microvillus
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0046658 C anchored component of plasma membrane
GO:0050896 P response to stimulus
FPKM:2.60 TPM:2.62
974 A_BomoSK_comp10477_c0_seq1
3404bp
 PREDICTED:_cyclin-G-associated_kinase-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005925 C focal adhesion
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030054 C cell junction
GO:0030332 F cyclin binding
GO:0048471 C perinuclear region of cytoplasm
FPKM:3.18 TPM:3.20
975 A_BomoSK_comp10477_c0_seq2
1186bp
 PREDICTED:_cyclin-G-associated_kinase-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005925 C focal adhesion
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030054 C cell junction
GO:0030332 F cyclin binding
GO:0048471 C perinuclear region of cytoplasm
FPKM:3.47 TPM:3.49
976 A_BomoSK_comp10477_c1_seq1
216bp
FPKM:2.87 TPM:2.89
977 A_BomoSK_comp1047804_c0_seq1
297bp
 PREDICTED:_uncharacterized_protein_LOC105842884_[Bombyx_mori]
FPKM:1.01 TPM:1.02
978 A_BomoSK_comp104781_c0_seq1
441bp
 PREDICTED:_DPH3_homolog_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0017183 P peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO:0046872 F metal ion binding
FPKM:8.90 TPM:8.95
979 A_BomoSK_comp10478_c0_seq1
242bp
 hypothetical_protein_[Acidobacteriaceae_bacterium_KBS_83]
FPKM:1.86 TPM:1.87
980 A_BomoSK_comp10479_c0_seq1
392bp
FPKM:3.31 TPM:3.33
981 A_BomoSK_comp10479_c0_seq2
412bp
FPKM:0.00 TPM:0.00
982 A_BomoSK_comp10479_c1_seq1
363bp
FPKM:1.60 TPM:1.61
983 A_BomoSK_comp1048044_c0_seq1
213bp
 hypothetical_protein_L484_026388_[Morus_notabilis]
FPKM:1.53 TPM:1.53
984 A_BomoSK_comp10480_c0_seq1
406bp
FPKM:1.29 TPM:1.30
985 A_BomoSK_comp10480_c1_seq1
245bp
 PREDICTED:_uncharacterized_protein_LOC105384811_[Plutella_xylostella]
FPKM:1.78 TPM:1.79
986 A_BomoSK_comp104819_c0_seq1
341bp
 hypothetical_protein_[Microvirga_lupini]
FPKM:0.73 TPM:0.74
987 A_BomoSK_comp10481_c0_seq1
1371bp
 PREDICTED:_DNA/RNA-binding_protein_KIN17-like_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0016363 C nuclear matrix
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
FPKM:7.41 TPM:7.45
988 A_BomoSK_comp10482_c1_seq1
236bp
FPKM:2.03 TPM:2.04
989 A_BomoSK_comp10483_c0_seq1
394bp
 hypothetical_protein_OCBIM_22005002mg_[Octopus_bimaculoides]
FPKM:1.64 TPM:1.65
990 A_BomoSK_comp10483_c1_seq1
654bp
 PREDICTED:_uncharacterized_protein_LOC101736680_[Bombyx_mori]
FPKM:3.02 TPM:3.03
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