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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
241 A_BomoSK_comp10108_c0_seq2
2197bp
 PREDICTED:_transcription_factor_Dp-1_isoform_X1_[Amyelois_transitella]
GO:0000278 P mitotic cell cycle
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0019904 F protein domain specific binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070345 P negative regulation of fat cell proliferation
GO:1900740 P positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway
FPKM:4.75 TPM:4.78
242 A_BomoSK_comp10109_c0_seq1
337bp
FPKM:1.13 TPM:1.13
243 A_BomoSK_comp10109_c1_seq1
335bp
 amino_acid_dehydrogenase_[Pseudomonas_syringae]
FPKM:3.81 TPM:3.83
244 A_BomoSK_comp1011048_c0_seq1
214bp
FPKM:1.49 TPM:1.50
245 A_BomoSK_comp101106_c0_seq1
3259bp
 PREDICTED:_spindle_pole_body_component_110_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007099 P centriole replication
GO:0019904 F protein domain specific binding
GO:0051299 P centrosome separation
GO:0051301 P cell division
GO:1902410 P mitotic cytokinetic process
FPKM:2.98 TPM:3.00
246 A_BomoSK_comp10110_c0_seq1
2766bp
 PREDICTED:_hormone-sensitive_lipase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005901 C caveola
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0006629 P lipid metabolic process
GO:0008152 P metabolic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0019433 P triglyceride catabolic process
GO:0033878 F hormone-sensitive lipase activity
GO:0042134 F rRNA primary transcript binding
FPKM:4.47 TPM:4.49
247 A_BomoSK_comp10111_c0_seq1
1651bp
 PREDICTED:_eukaryotic_translation_initiation_factor_3_subunit_M_[Amyelois_transitella]
GO:0001731 P formation of translation preinitiation complex
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0033290 C eukaryotic 48S preinitiation complex
FPKM:25.65 TPM:25.80
248 A_BomoSK_comp10112_c0_seq1
1470bp
 PREDICTED:_uncharacterized_protein_LOC105842097_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007067 P mitotic cell cycle
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0019901 F protein kinase binding
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051298 P centrosome duplication
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
FPKM:3.76 TPM:3.79
249 A_BomoSK_comp10112_c0_seq2
882bp
 PREDICTED:_uncharacterized_protein_LOC105842097_[Bombyx_mori]
FPKM:0.00 TPM:0.00
250 A_BomoSK_comp101139_c0_seq1
734bp
 PREDICTED:_rap1_GTPase-GDP_dissociation_stimulator_1-B_[Amyelois_transitella]
FPKM:3.29 TPM:3.31
251 A_BomoSK_comp10113_c0_seq1
607bp
 PREDICTED:_tRNA-splicing_endonuclease_subunit_Sen34_[Papilio_xuthus]
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008033 P tRNA processing
GO:0016829 F lyase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:5.09 TPM:5.12
252 A_BomoSK_comp10113_c0_seq2
436bp
 PREDICTED:_tRNA-splicing_endonuclease_subunit_Sen34-like_[Plutella_xylostella]
FPKM:1.61 TPM:1.61
253 A_BomoSK_comp10114_c0_seq1
2427bp
 putative_lectin_C-type_domain_containing_protein_[Danaus_plexippus]
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0004528 F phosphodiesterase I activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008409 F 5'-3' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0017108 F 5'-flap endonuclease activity
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0036297 P interstrand cross-link repair
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0070336 F flap-structured DNA binding
FPKM:3.55 TPM:3.57
254 A_BomoSK_comp10114_c0_seq2
2759bp
 putative_lectin_C-type_domain_containing_protein_[Danaus_plexippus]
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0004528 F phosphodiesterase I activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008409 F 5'-3' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0017108 F 5'-flap endonuclease activity
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0036297 P interstrand cross-link repair
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0070336 F flap-structured DNA binding
FPKM:4.09 TPM:4.12
255 A_BomoSK_comp10115_c0_seq1
467bp
 copper-translocating_P-type_ATPase_[Lactobacillus_nantensis]
FPKM:2.82 TPM:2.84
256 A_BomoSK_comp10115_c1_seq1
503bp
FPKM:0.71 TPM:0.72
257 A_BomoSK_comp101161_c0_seq1
910bp
 PREDICTED:_integrator_complex_subunit_5_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
FPKM:4.36 TPM:4.38
258 A_BomoSK_comp10116_c0_seq1
698bp
FPKM:7.50 TPM:7.54
259 A_BomoSK_comp10117_c0_seq1
854bp
 PREDICTED:_uncharacterized_protein_LOC105842934_isoform_X2_[Bombyx_mori]
FPKM:0.84 TPM:0.85
260 A_BomoSK_comp101187_c0_seq1
2680bp
 hypothetical_protein_KGM_06054_[Danaus_plexippus]
FPKM:4.33 TPM:4.35
261 A_BomoSK_comp101189_c0_seq1
2676bp
 PREDICTED:_mannosyl-oligosaccharide_glucosidase_[Amyelois_transitella]
GO:0003824 F catalytic activity
GO:0004558 F alpha-1,4-glucosidase activity
GO:0004573 F Glc3Man9GlcNAc2 oligosaccharide glucosidase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006487 P protein N-linked glycosylation
GO:0008152 P metabolic process
GO:0009311 P oligosaccharide metabolic process
GO:0009913 P epidermal cell differentiation
GO:0010053 P root epidermal cell differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:5.01 TPM:5.04
262 A_BomoSK_comp10118_c0_seq1
1267bp
 PREDICTED:_MMS19_nucleotide_excision_repair_protein_homolog_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007059 P chromosome segregation
GO:0016020 C membrane
GO:0016226 P iron-sulfur cluster assembly
GO:0019899 F enzyme binding
GO:0030331 F estrogen receptor binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071817 C MMXD complex
GO:0097361 C CIA complex
FPKM:5.26 TPM:5.29
263 A_BomoSK_comp10118_c1_seq1
2117bp
 PREDICTED:_MMS19_nucleotide_excision_repair_protein_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016226 P iron-sulfur cluster assembly
GO:0097361 C CIA complex
FPKM:4.92 TPM:4.95
264 A_BomoSK_comp10119_c0_seq1
1811bp
 PREDICTED:_calcium/calmodulin-dependent_protein_kinase_type_1-like_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032793 P positive regulation of CREB transcription factor activity
GO:0040040 P thermosensory behavior
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048812 P neuron projection morphogenesis
FPKM:8.63 TPM:8.68
265 A_BomoSK_comp10119_c1_seq1
2805bp
FPKM:4.48 TPM:4.51
266 A_BomoSK_comp1012031_c0_seq1
201bp
FPKM:3.99 TPM:4.01
267 A_BomoSK_comp10120_c0_seq1
2276bp
 PREDICTED:_PAX-interacting_protein_1_[Bombyx_mori]
FPKM:8.04 TPM:8.09
268 A_BomoSK_comp10120_c1_seq1
1187bp
 PREDICTED:_PAX-interacting_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
FPKM:7.59 TPM:7.64
269 A_BomoSK_comp101215_c0_seq1
490bp
 hypothetical_protein_RR48_05758_[Papilio_machaon]
FPKM:3.73 TPM:3.75
270 A_BomoSK_comp10121_c0_seq1
1731bp
 Putative_transport_protein_[Vibrio_splendidus]
FPKM:5.53 TPM:5.57
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