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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
271 A_BomoSK_comp101227_c0_seq1
887bp
 PREDICTED:_GTPase-activating_protein_CdGAPr_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005096 F GTPase activator activity
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007266 P Rho protein signal transduction
GO:0007275 P multicellular organism development
GO:0031290 P retinal ganglion cell axon guidance
GO:0043547 P positive regulation of GTPase activity
FPKM:5.79 TPM:5.82
272 A_BomoSK_comp101229_c0_seq1
1007bp
FPKM:4.25 TPM:4.28
273 A_BomoSK_comp10122_c0_seq1
1106bp
 Uncharacterized_protein_OBRU01_03354_[Operophtera_brumata]
FPKM:7.77 TPM:7.82
274 A_BomoSK_comp101235_c0_seq1
591bp
FPKM:2.09 TPM:2.11
275 A_BomoSK_comp10124_c0_seq1
585bp
 PREDICTED:_uncharacterized_protein_LOC101741349_isoform_X3_[Bombyx_mori]
FPKM:7.65 TPM:7.69
276 A_BomoSK_comp10124_c0_seq2
456bp
 PREDICTED:_uncharacterized_protein_LOC101741349_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
277 A_BomoSK_comp101251_c0_seq1
560bp
 proteasome_accessory_factor_PafA2_[Bifidobacterium_aesculapii]
FPKM:6.50 TPM:6.54
278 A_BomoSK_comp10125_c0_seq1
4784bp
 hypothetical_protein_KGM_21276_[Danaus_plexippus]
GO:0000123 C histone acetyltransferase complex
GO:0000124 C SAGA complex
GO:0000281 P mitotic cytokinesis
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006909 P phagocytosis
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035222 P wing disc pattern formation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043486 P histone exchange
GO:0043966 P histone H3 acetylation
GO:0045747 P positive regulation of Notch signaling pathway
FPKM:2.65 TPM:2.67
279 A_BomoSK_comp10126_c0_seq1
2932bp
 PREDICTED:_uncharacterized_protein_LOC101737617_isoform_X4_[Bombyx_mori]
FPKM:0.00 TPM:0.00
280 A_BomoSK_comp10126_c0_seq2
3094bp
 PREDICTED:_uncharacterized_protein_LOC101737617_isoform_X2_[Bombyx_mori]
FPKM:1.04 TPM:1.05
281 A_BomoSK_comp10126_c0_seq3
2986bp
 PREDICTED:_uncharacterized_protein_LOC101737617_isoform_X4_[Bombyx_mori]
FPKM:2.01 TPM:2.03
282 A_BomoSK_comp10126_c0_seq4
3040bp
 PREDICTED:_uncharacterized_protein_LOC101737617_isoform_X3_[Bombyx_mori]
FPKM:5.54 TPM:5.57
283 A_BomoSK_comp10127_c0_seq1
958bp
 PREDICTED:_putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0007419 P ventral cord development
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:1.85 TPM:1.86
284 A_BomoSK_comp10127_c0_seq2
1303bp
 PREDICTED:_putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0007419 P ventral cord development
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.43 TPM:0.43
285 A_BomoSK_comp10127_c0_seq3
4801bp
 PREDICTED:_putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0007419 P ventral cord development
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:7.18 TPM:7.23
286 A_BomoSK_comp10128_c0_seq1
1082bp
FPKM:2.39 TPM:2.40
287 A_BomoSK_comp10129_c0_seq1
287bp
FPKM:0.55 TPM:0.56
288 A_BomoSK_comp10129_c1_seq1
637bp
FPKM:1.00 TPM:1.01
289 A_BomoSK_comp10130_c0_seq1
237bp
 hypothetical_protein_cypCar_00046762,_partial_[Cyprinus_carpio]
FPKM:1.85 TPM:1.86
290 A_BomoSK_comp10130_c0_seq2
288bp
 hypothetical_protein_cypCar_00046762,_partial_[Cyprinus_carpio]
FPKM:1.19 TPM:1.20
291 A_BomoSK_comp10130_c0_seq3
865bp
 type_I-D_CRISPR-associated_protein_Cas7/Csc2_[Microcystis_aeruginosa]
FPKM:1.08 TPM:1.08
292 A_BomoSK_comp1013193_c0_seq1
219bp
FPKM:2.71 TPM:2.73
293 A_BomoSK_comp10131_c0_seq1
756bp
 PREDICTED:_uncharacterized_protein_LOC106136345_[Amyelois_transitella]
FPKM:1.66 TPM:1.67
294 A_BomoSK_comp10131_c0_seq2
758bp
FPKM:0.91 TPM:0.92
295 A_BomoSK_comp10132_c0_seq1
1020bp
 putative_cation-transporting_ATPase_13A1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006812 P cation transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0098655 P cation transmembrane transport
FPKM:10.20 TPM:10.26
296 A_BomoSK_comp10133_c0_seq1
231bp
 hypothetical_protein_cypCar_00039601_[Cyprinus_carpio]
FPKM:1.10 TPM:1.11
297 A_BomoSK_comp101345_c0_seq1
951bp
FPKM:4.49 TPM:4.52
298 A_BomoSK_comp10134_c0_seq1
244bp
FPKM:0.00 TPM:0.00
299 A_BomoSK_comp101350_c0_seq1
313bp
 fibrinogen-like_1,_isoform_CRA_c,_partial_[Homo_sapiens]
FPKM:5.79 TPM:5.82
300 A_BomoSK_comp10135_c0_seq1
2041bp
 PREDICTED:_nucleolar_protein_10_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
FPKM:4.36 TPM:4.39
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