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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
91 A_BomoFB_comp10022_c0_seq2
806bp
FPKM:1.08 TPM:1.18
92 A_BomoFB_comp100232_c0_seq1
1732bp
 origin_recognition_complex_subunit_2_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000792 C heterochromatin
GO:0000808 C origin recognition complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0005694 C chromosome
GO:0005723 C alpha-heterochromatin
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006342 P heterochromatin assembly
GO:0007052 P mitotic spindle organization
GO:0007076 P mitotic chromosome condensation
GO:0007307 P eggshell chorion gene amplification
GO:0008283 P cell population proliferation
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
FPKM:2.38 TPM:2.61
93 A_BomoFB_comp100232_c0_seq2
1732bp
 origin_recognition_complex_subunit_2_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000792 C heterochromatin
GO:0000808 C origin recognition complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0005694 C chromosome
GO:0005723 C alpha-heterochromatin
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006342 P heterochromatin assembly
GO:0007052 P mitotic spindle organization
GO:0007076 P mitotic chromosome condensation
GO:0007307 P eggshell chorion gene amplification
GO:0008283 P cell population proliferation
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
FPKM:0.00 TPM:0.00
94 A_BomoFB_comp100234_c0_seq1
944bp
 PREDICTED:_TAF5-like_RNA_polymerase_II_p300/CBP-associated_factor-associated_factor_65_kDa_subunit_5L_[Bombyx_mori]
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0043966 P histone H3 acetylation
FPKM:3.35 TPM:3.67
95 A_BomoFB_comp10023_c0_seq1
5166bp
 PREDICTED:_AMP_deaminase_2_isoform_X5_[Bombyx_mori]
GO:0003876 F AMP deaminase activity
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
FPKM:11.08 TPM:12.14
96 A_BomoFB_comp10023_c0_seq2
6400bp
 PREDICTED:_AMP_deaminase_2_isoform_X2_[Bombyx_mori]
GO:0003876 F AMP deaminase activity
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
FPKM:6.47 TPM:7.09
97 A_BomoFB_comp10023_c0_seq3
6237bp
 PREDICTED:_AMP_deaminase_2_isoform_X5_[Bombyx_mori]
GO:0003876 F AMP deaminase activity
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
FPKM:3.72 TPM:4.08
98 A_BomoFB_comp10023_c0_seq4
5329bp
 PREDICTED:_AMP_deaminase_2_isoform_X2_[Bombyx_mori]
GO:0003876 F AMP deaminase activity
GO:0006188 P IMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0009168 P purine ribonucleoside monophosphate biosynthetic process
GO:0016787 F hydrolase activity
GO:0019239 F deaminase activity
GO:0032264 P IMP salvage
GO:0046033 P AMP metabolic process
GO:0046034 P ATP metabolic process
GO:0046039 P GTP metabolic process
GO:0046872 F metal ion binding
GO:0052652 P cyclic purine nucleotide metabolic process
GO:0097009 P energy homeostasis
FPKM:21.47 TPM:23.53
99 A_BomoFB_comp100247_c0_seq1
706bp
 hypothetical_protein_KGM_19707_[Danaus_plexippus]
FPKM:3.74 TPM:4.09
100 A_BomoFB_comp10024_c0_seq1
1340bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Amyelois_transitella]
FPKM:2.53 TPM:2.78
101 A_BomoFB_comp10025_c0_seq1
939bp
 PREDICTED:_E3_ubiquitin-protein_ligase_KCMF1_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:8.11 TPM:8.89
102 A_BomoFB_comp10025_c0_seq2
950bp
 PREDICTED:_E3_ubiquitin-protein_ligase_KCMF1_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
103 A_BomoFB_comp100269_c0_seq1
677bp
FPKM:3.63 TPM:3.97
104 A_BomoFB_comp100269_c0_seq2
678bp
 protein_phosphatase_1_regulatory_subunit_7_[Rhodotorula_sp._JG-1b]
FPKM:0.00 TPM:0.00
105 A_BomoFB_comp10026_c0_seq1
750bp
 PREDICTED:_guanylate_cyclase_32E-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004016 F adenylate cyclase activity
GO:0004383 F guanylate cyclase activity
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005886 C plasma membrane
GO:0006182 P cGMP biosynthetic process
GO:0006468 P protein phosphorylation
GO:0006935 P chemotaxis
GO:0007165 P signal transduction
GO:0007635 P chemosensory behavior
GO:0008074 C guanylate cyclase complex, soluble
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0010035 P response to inorganic substance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0032026 P response to magnesium ion
GO:0035556 P intracellular signal transduction
GO:0050850 P positive regulation of calcium-mediated signaling
GO:1902074 P response to salt
FPKM:13.41 TPM:14.69
106 A_BomoFB_comp10026_c1_seq1
703bp
 PREDICTED:_guanylate_cyclase_32E-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004383 F guanylate cyclase activity
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0006182 P cGMP biosynthetic process
GO:0006468 P protein phosphorylation
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0035556 P intracellular signal transduction
FPKM:25.37 TPM:27.80
107 A_BomoFB_comp100279_c0_seq1
1094bp
 PREDICTED:_THO_complex_subunit_3_[Amyelois_transitella]
GO:0000346 C transcription export complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031124 P mRNA 3'-end processing
GO:0046784 P viral mRNA export from host cell nucleus
GO:0051028 P mRNA transport
FPKM:4.05 TPM:4.44
108 A_BomoFB_comp10027_c0_seq1
322bp
 cuticular_protein_hypothetical_34_precursor_[Bombyx_mori]
FPKM:47.77 TPM:52.34
109 A_BomoFB_comp10028_c0_seq1
219bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.00 TPM:0.00
110 A_BomoFB_comp10028_c0_seq2
618bp
FPKM:6.61 TPM:7.25
111 A_BomoFB_comp10028_c0_seq3
399bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_8-like_[Bombyx_mori]
FPKM:16.32 TPM:17.89
112 A_BomoFB_comp10028_c0_seq4
4040bp
 PREDICTED:_argonaute_2_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004521 F endoribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007279 P pole cell formation
GO:0007349 P cellularization
GO:0007367 P segment polarity determination
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0010526 P negative regulation of transposition, RNA-mediated
GO:0016032 P viral process
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0033227 P dsRNA transport
GO:0035071 P salivary gland cell autophagic cell death
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035190 P syncytial nuclear migration
GO:0035195 P gene silencing by miRNA
GO:0035197 F siRNA binding
GO:0045071 P negative regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0048102 P autophagic cell death
GO:0051607 P defense response to virus
GO:0070578 C RISC-loading complex
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0098586 P cellular response to virus
FPKM:19.26 TPM:21.10
113 A_BomoFB_comp100292_c0_seq1
608bp
 19.5_kDa_heat_shock_protein_[Bombyx_mori]
GO:0005797 C Golgi medial cisterna
GO:0009408 P response to heat
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0051082 F unfolded protein binding
FPKM:5.49 TPM:6.02
114 A_BomoFB_comp100299_c0_seq1
3020bp
 PREDICTED:_serine/threonine-protein_kinase_par-1-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0001958 P endochondral ossification
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032880 P regulation of protein localization
GO:0035108 P limb morphogenesis
GO:0035264 P multicellular organism growth
GO:0046872 F metal ion binding
GO:0048705 P skeletal system morphogenesis
GO:0060351 P cartilage development involved in endochondral bone morphogenesis
FPKM:3.00 TPM:3.29
115 A_BomoFB_comp10029_c0_seq1
3489bp
 polyhomeotic_[Bombyx_mori]
GO:0000070 P mitotic sister chromatid segregation
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006342 P heterochromatin assembly
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0016458 P obsolete gene silencing
GO:0021954 P central nervous system neuron development
GO:0030708 P germarium-derived female germ-line cyst encapsulation
GO:0030713 P ovarian follicle cell stalk formation
GO:0035075 P response to ecdysone
GO:0035102 C PRC1 complex
GO:0035186 P syncytial blastoderm mitotic cell cycle
GO:0044547 F DNA topoisomerase binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051087 F chaperone binding
FPKM:3.97 TPM:4.35
116 A_BomoFB_comp10029_c0_seq2
3471bp
 polyhomeotic_[Bombyx_mori]
GO:0000070 P mitotic sister chromatid segregation
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006342 P heterochromatin assembly
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0016458 P obsolete gene silencing
GO:0021954 P central nervous system neuron development
GO:0030708 P germarium-derived female germ-line cyst encapsulation
GO:0030713 P ovarian follicle cell stalk formation
GO:0035075 P response to ecdysone
GO:0035102 C PRC1 complex
GO:0035186 P syncytial blastoderm mitotic cell cycle
GO:0044547 F DNA topoisomerase binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051087 F chaperone binding
FPKM:3.04 TPM:3.33
117 A_BomoFB_comp10029_c0_seq3
356bp
 PREDICTED:_polyhomeotic-proximal_chromatin_protein-like_[Amyelois_transitella]
FPKM:0.00 TPM:0.00
118 A_BomoFB_comp1002_c0_seq1
286bp
 TRASDJ_[Saturnia_japonica]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.04 TPM:1.13
119 A_BomoFB_comp100309_c0_seq1
611bp
FPKM:4.19 TPM:4.59
120 A_BomoFB_comp10030_c0_seq1
2265bp
 PREDICTED:_glucose_dehydrogenase_[FAD,_quinone]-like_[Papilio_polytes]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:7.95 TPM:8.71
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