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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
121 A_BomoFB_comp10030_c0_seq2
2250bp
 PREDICTED:_glucose_dehydrogenase_[FAD,_quinone]-like_[Papilio_polytes]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.00 TPM:0.00
122 A_BomoFB_comp100317_c0_seq1
711bp
 PREDICTED:_protein_purity_of_essence_[Bombyx_mori]
GO:0005516 F calmodulin binding
GO:0007275 P multicellular organism development
GO:0007286 P spermatid development
GO:0007291 P sperm individualization
GO:0007399 P nervous system development
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
FPKM:4.22 TPM:4.62
123 A_BomoFB_comp10031_c0_seq1
457bp
FPKM:0.79 TPM:0.87
124 A_BomoFB_comp10031_c0_seq2
513bp
FPKM:1.97 TPM:2.16
125 A_BomoFB_comp100320_c0_seq1
445bp
FPKM:4.76 TPM:5.22
126 A_BomoFB_comp100322_c0_seq1
1547bp
 3-hydroxy-3-methylglutaryl-CoA_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004421 F hydroxymethylglutaryl-CoA synthase activity
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0008152 P metabolic process
GO:0008202 P steroid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016126 P sterol biosynthetic process
GO:0016740 F transferase activity
FPKM:2.55 TPM:2.79
127 A_BomoFB_comp100327_c0_seq1
637bp
FPKM:2.99 TPM:3.28
128 A_BomoFB_comp10032_c0_seq1
3228bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
FPKM:1.78 TPM:1.95
129 A_BomoFB_comp10032_c0_seq2
3274bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
FPKM:0.51 TPM:0.56
130 A_BomoFB_comp10032_c0_seq3
3440bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005044 F scavenger receptor activity
GO:0005515 F protein binding
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
FPKM:0.07 TPM:0.08
131 A_BomoFB_comp10032_c0_seq4
3394bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005044 F scavenger receptor activity
GO:0005515 F protein binding
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
FPKM:0.21 TPM:0.23
132 A_BomoFB_comp10032_c0_seq5
3374bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005044 F scavenger receptor activity
GO:0005515 F protein binding
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
FPKM:0.11 TPM:0.12
133 A_BomoFB_comp10032_c0_seq6
1503bp
 serine_proteinase_[Samia_ricini]
GO:0004252 F serine-type endopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
FPKM:14.14 TPM:15.50
134 A_BomoFB_comp10032_c0_seq7
3460bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005044 F scavenger receptor activity
GO:0005515 F protein binding
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
FPKM:0.13 TPM:0.14
135 A_BomoFB_comp10032_c0_seq8
3208bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
FPKM:0.88 TPM:0.97
136 A_BomoFB_comp10032_c0_seq9
3294bp
 PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
FPKM:0.98 TPM:1.07
137 A_BomoFB_comp100337_c0_seq1
545bp
FPKM:3.75 TPM:4.11
138 A_BomoFB_comp10033_c0_seq1
368bp
 hypothetical_protein_[Porphyromonas_asaccharolytica]
FPKM:1.17 TPM:1.28
139 A_BomoFB_comp10033_c0_seq2
1406bp
FPKM:2.00 TPM:2.19
140 A_BomoFB_comp10033_c0_seq3
1055bp
 PREDICTED:_THAP_domain-containing_protein_2-like_[Bombyx_mori]
FPKM:1.51 TPM:1.65
141 A_BomoFB_comp10033_c0_seq4
1291bp
 hypothetical_protein_HMPREF0981_00637_[Erysipelotrichaceae_bacterium_6_1_45]
FPKM:2.05 TPM:2.24
142 A_BomoFB_comp10033_c1_seq1
264bp
 hypothetical_protein_[Escherichia_coli]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:30.38 TPM:33.29
143 A_BomoFB_comp10033_c1_seq2
1813bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:16.12 TPM:17.66
144 A_BomoFB_comp10033_c1_seq3
724bp
 transposase_[Attacus_atlas]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:3.01 TPM:3.30
145 A_BomoFB_comp100346_c0_seq1
357bp
 endonuclease_[Parvibaculum_lavamentivorans]
FPKM:4.07 TPM:4.46
146 A_BomoFB_comp10034_c0_seq1
3636bp
 PREDICTED:_ubiquitin-conjugating_enzyme_E2_W_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006513 P protein monoubiquitination
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0071218 P cellular response to misfolded protein
FPKM:10.39 TPM:11.39
147 A_BomoFB_comp100354_c0_seq1
853bp
 PREDICTED:_NEDD8-conjugating_enzyme_UBE2F-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006301 P postreplication repair
GO:0016874 F ligase activity
GO:0019788 F NEDD8 transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0045116 P protein neddylation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
FPKM:4.21 TPM:4.62
148 A_BomoFB_comp10035_c0_seq1
709bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
149 A_BomoFB_comp10035_c0_seq2
859bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:3.53 TPM:3.87
150 A_BomoFB_comp10035_c0_seq3
804bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
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