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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
61 A_BomoFB_comp100159_c0_seq1
1063bp
 PREDICTED:_bumetanide-sensitive_sodium-(potassium)-chloride_cotransporter-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006821 P chloride transport
GO:0015293 F symporter activity
GO:0015377 F cation:chloride symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:4.20 TPM:4.60
62 A_BomoFB_comp100159_c0_seq2
1064bp
 PREDICTED:_bumetanide-sensitive_sodium-(potassium)-chloride_cotransporter-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006821 P chloride transport
GO:0015293 F symporter activity
GO:0015377 F cation:chloride symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:0.00 TPM:0.00
63 A_BomoFB_comp10015_c0_seq1
203bp
FPKM:6.79 TPM:7.44
64 A_BomoFB_comp100166_c0_seq1
332bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:4.35 TPM:4.77
65 A_BomoFB_comp10016_c0_seq1
4883bp
 PREDICTED:_transcription_activator_BRG1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003713 F transcription coactivator activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006909 P phagocytosis
GO:0007275 P multicellular organism development
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007409 P axonogenesis
GO:0007419 P ventral cord development
GO:0007474 P imaginal disc-derived wing vein specification
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007517 P muscle organ development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0022008 P neurogenesis
GO:0035060 C brahma complex
GO:0035172 P hemocyte proliferation
GO:0035329 P hippo signaling
GO:0036335 P intestinal stem cell homeostasis
GO:0042393 F histone binding
GO:0043044 P chromatin remodeling
GO:0043974 P histone H3-K27 acetylation
GO:0045088 P regulation of innate immune response
GO:0045742 P positive regulation of epidermal growth factor receptor signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048096 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0048477 P oogenesis
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0070604 C RSC-type complex
GO:0070983 P dendrite guidance
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
GO:2000648 P positive regulation of stem cell proliferation
FPKM:7.24 TPM:7.94
66 A_BomoFB_comp100174_c0_seq1
778bp
FPKM:3.01 TPM:3.30
67 A_BomoFB_comp100176_c0_seq1
538bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_5_[Amyelois_transitella]
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0015629 C actin cytoskeleton
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0033276 C transcription factor TFTC complex
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0043231 C intracellular membrane-bounded organelle
GO:0044212 F transcription cis-regulatory region binding
GO:0046983 F protein dimerization activity
GO:1901796 P regulation of signal transduction by p53 class mediator
FPKM:3.21 TPM:3.52
68 A_BomoFB_comp1001793_c0_seq1
212bp
FPKM:2.80 TPM:3.07
69 A_BomoFB_comp10017_c0_seq1
9488bp
 PREDICTED:_dynein_heavy_chain,_cytoplasmic_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000776 C kinetochore
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0006886 P intracellular protein transport
GO:0007018 P microtubule-based movement
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007098 P centrosome cycle
GO:0007279 P pole cell formation
GO:0007282 P cystoblast division
GO:0007294 P germarium-derived oocyte fate determination
GO:0007298 P border follicle cell migration
GO:0007301 P female germline ring canal formation
GO:0007312 P oocyte nucleus migration involved in oocyte dorsal/ventral axis specification
GO:0007349 P cellularization
GO:0007405 P neuroblast proliferation
GO:0008088 P axo-dendritic transport
GO:0008090 P retrograde axonal transport
GO:0008298 P intracellular mRNA localization
GO:0008569 F minus-end-directed microtubule motor activity
GO:0016319 P mushroom body development
GO:0016887 F ATP hydrolysis activity
GO:0030071 P regulation of mitotic metaphase/anaphase transition
GO:0030286 C dynein complex
GO:0030529 C ribonucleoprotein complex
GO:0030723 P ovarian fusome organization
GO:0034063 P stress granule assembly
GO:0034501 P protein localization to kinetochore
GO:0035011 P melanotic encapsulation of foreign target
GO:0040001 P establishment of mitotic spindle localization
GO:0040003 P chitin-based cuticle development
GO:0042623 F ATP hydrolysis activity
GO:0043005 C neuron projection
GO:0045169 C fusome
GO:0045172 C germline ring canal
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0045198 P establishment of epithelial cell apical/basal polarity
GO:0045478 P fusome organization
GO:0045505 F dynein intermediate chain binding
GO:0046604 P positive regulation of mitotic centrosome separation
GO:0047497 P mitochondrion transport along microtubule
GO:0048134 P germ-line cyst formation
GO:0048311 P mitochondrion distribution
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0050658 P RNA transport
GO:0051237 P maintenance of RNA location
GO:0051642 P centrosome localization
GO:0051683 P establishment of Golgi localization
GO:0051959 F dynein light intermediate chain binding
GO:1904115 C axon cytoplasm
GO:1904801 P positive regulation of neuron remodeling
FPKM:7.59 TPM:8.31
70 A_BomoFB_comp100182_c0_seq1
818bp
FPKM:3.59 TPM:3.93
71 A_BomoFB_comp10018_c0_seq1
5233bp
 PREDICTED:_protein_unc-13_homolog_D_isoform_X6_[Bombyx_mori]
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007269 P neurotransmitter secretion
GO:0008022 F protein C-terminus binding
GO:0098793 C presynapse
FPKM:1.13 TPM:1.24
72 A_BomoFB_comp10018_c0_seq2
6007bp
 PREDICTED:_protein_unc-13_homolog_D_isoform_X2_[Bombyx_mori]
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007269 P neurotransmitter secretion
GO:0008022 F protein C-terminus binding
GO:0098793 C presynapse
FPKM:10.84 TPM:11.87
73 A_BomoFB_comp100191_c0_seq1
1154bp
 PREDICTED:_protein_SDE2_homolog_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005634 C nucleus
FPKM:2.96 TPM:3.25
74 A_BomoFB_comp10019_c0_seq1
2314bp
 PREDICTED:_RNA-binding_protein_39_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:2.91 TPM:3.19
75 A_BomoFB_comp10019_c0_seq2
1911bp
 PREDICTED:_RNA-binding_protein_39_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:0.00 TPM:0.00
76 A_BomoFB_comp10019_c0_seq3
2318bp
 PREDICTED:_RNA-binding_protein_39_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:1.57 TPM:1.72
77 A_BomoFB_comp10019_c0_seq4
1915bp
 PREDICTED:_RNA-binding_protein_39_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:3.13 TPM:3.43
78 A_BomoFB_comp10019_c0_seq5
1803bp
 PREDICTED:_RNA-binding_protein_39_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:0.00 TPM:0.00
79 A_BomoFB_comp10019_c0_seq6
1807bp
 PREDICTED:_RNA-binding_protein_39_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:12.79 TPM:14.02
80 A_BomoFB_comp100203_c0_seq1
268bp
FPKM:3.71 TPM:4.07
81 A_BomoFB_comp100208_c0_seq1
1158bp
 PREDICTED:_homeobox_protein_SIX2-like_[Papilio_polytes]
GO:0001744 P insect visual primordium formation
GO:0001745 P compound eye morphogenesis
GO:0001746 P Bolwig's organ morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007455 P eye-antennal disc morphogenesis
GO:0007623 P circadian rhythm
GO:0008134 F transcription factor binding
GO:0008347 P glial cell migration
GO:0009649 P entrainment of circadian clock
GO:0035271 P ring gland development
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048749 P compound eye development
FPKM:2.62 TPM:2.87
82 A_BomoFB_comp10020_c0_seq1
2952bp
 PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
FPKM:6.23 TPM:6.83
83 A_BomoFB_comp10020_c0_seq2
2913bp
 PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
FPKM:1.27 TPM:1.39
84 A_BomoFB_comp10020_c0_seq3
2826bp
 PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
FPKM:1.30 TPM:1.42
85 A_BomoFB_comp100211_c0_seq1
657bp
 putative_Lysosomal_trafficking_regulator_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007040 P lysosome organization
GO:0015031 P protein transport
GO:0015630 C microtubule cytoskeleton
GO:0030595 P leukocyte chemotaxis
GO:0032438 P melanosome organization
GO:0032510 P endosome to lysosome transport via multivesicular body sorting pathway
GO:0033364 P mast cell secretory granule organization
GO:0042267 P natural killer cell mediated cytotoxicity
GO:0042742 P defense response to bacterium
GO:0042832 P defense response to protozoan
GO:0043473 P pigmentation
GO:0051607 P defense response to virus
FPKM:4.81 TPM:5.27
86 A_BomoFB_comp100218_c0_seq1
810bp
 Uncharacterized_protein_OBRU01_15943_[Operophtera_brumata]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0042273 P ribosomal large subunit biogenesis
GO:0043023 F ribosomal large subunit binding
GO:0070130 P negative regulation of mitochondrial translation
GO:0090071 P negative regulation of ribosome biogenesis
FPKM:4.16 TPM:4.55
87 A_BomoFB_comp10021_c0_seq1
4493bp
 PREDICTED:_hemocytin_[Amyelois_transitella]
GO:0007155 P cell adhesion
GO:0030246 F carbohydrate binding
FPKM:9.41 TPM:10.31
88 A_BomoFB_comp100220_c0_seq1
980bp
 PREDICTED:_macrophage_erythroblast_attacher_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0043249 P erythrocyte maturation
GO:0051301 P cell division
FPKM:4.36 TPM:4.78
89 A_BomoFB_comp100222_c0_seq1
1757bp
 PREDICTED:_MMS19_nucleotide_excision_repair_protein_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016226 P iron-sulfur cluster assembly
GO:0097361 C CIA complex
FPKM:3.00 TPM:3.29
90 A_BomoFB_comp10022_c0_seq1
1636bp
FPKM:2.75 TPM:3.01
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