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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6091 A_BomoFB_comp12582_c0_seq1
648bp
 PREDICTED:_MD-2-related_lipid-recognition_protein-like_[Papilio_machaon]
GO:0005576 C extracellular region
GO:0008289 F lipid binding
FPKM:126.21 TPM:138.29
6092 A_BomoFB_comp125843_c0_seq1
296bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:4.74 TPM:5.20
6093 A_BomoFB_comp125909_c0_seq1
426bp
 PREDICTED:_putative_cyclin-dependent_serine/threonine-protein_kinase_DDB_G0272797/DDB_G0274007-like,_partial_[Saccoglossus_kowalevskii]
FPKM:2.90 TPM:3.18
6094 A_BomoFB_comp125986_c0_seq1
392bp
 hypothetical_protein_BOTBODRAFT_177093_[Botryobasidium_botryosum_FD-172_SS1]
FPKM:4.15 TPM:4.55
6095 A_BomoFB_comp125_c0_seq1
535bp
FPKM:0.77 TPM:0.84
6096 A_BomoFB_comp126086_c0_seq1
1172bp
 PREDICTED:_SAGA-associated_factor_11_homolog_[Papilio_machaon]
GO:0000124 C SAGA complex
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071819 C DUBm complex
FPKM:2.85 TPM:3.13
6097 A_BomoFB_comp126096_c0_seq1
369bp
FPKM:2.33 TPM:2.55
6098 A_BomoFB_comp126098_c0_seq1
592bp
FPKM:3.05 TPM:3.35
6099 A_BomoFB_comp126137_c0_seq1
702bp
FPKM:1.88 TPM:2.06
6100 A_BomoFB_comp126158_c0_seq1
450bp
 PREDICTED:_leucine-rich_repeat-containing_protein_16A_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007015 P actin filament organization
GO:0007596 P blood coagulation
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0030335 P positive regulation of cell migration
GO:0030838 P positive regulation of actin filament polymerization
GO:0031252 C cell leading edge
GO:0031529 P ruffle organization
GO:0031941 C filamentous actin
GO:0032403 F protein-containing complex binding
GO:0042995 C cell projection
GO:0044351 P macropinocytosis
GO:0044354 C macropinosome
GO:0046415 P urate metabolic process
GO:0051496 P positive regulation of stress fiber assembly
GO:0051638 P barbed-end actin filament uncapping
GO:0051639 P actin filament network formation
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1902745 P positive regulation of lamellipodium organization
GO:2000813 P negative regulation of barbed-end actin filament capping
FPKM:2.64 TPM:2.90
6101 A_BomoFB_comp126266_c0_seq1
652bp
 hypothetical_protein_KGM_20272_[Danaus_plexippus]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.89 TPM:3.17
6102 A_BomoFB_comp126323_c0_seq1
461bp
 uncharacterized_protein_Dpse_GA25732_[Drosophila_pseudoobscura_pseudoobscura]
FPKM:1.17 TPM:1.28
6103 A_BomoFB_comp126391_c0_seq1
265bp
FPKM:0.00 TPM:0.00
6104 A_BomoFB_comp126422_c0_seq1
342bp
FPKM:2.04 TPM:2.24
6105 A_BomoFB_comp126442_c0_seq1
503bp
FPKM:1.53 TPM:1.67
6106 A_BomoFB_comp1264_c0_seq1
932bp
 PREDICTED:_E3_ubiquitin-protein_ligase_MYCBP2-like_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007616 P long-term memory
GO:0007628 P adult walking behavior
GO:0008270 F zinc ion binding
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0016023 C cytoplasmic vesicle
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030509 P BMP signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0040011 P locomotion
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046872 F metal ion binding
GO:0048678 P response to axon injury
GO:0050808 P synapse organization
GO:2000331 P regulation of terminal button organization
FPKM:0.87 TPM:0.95
6107 A_BomoFB_comp126511_c0_seq1
1915bp
 PREDICTED:_uncharacterized_protein_LOC101737699_isoform_X1_[Bombyx_mori]
FPKM:2.23 TPM:2.44
6108 A_BomoFB_comp126523_c0_seq1
1042bp
 PREDICTED:_focal_adhesion_kinase_1_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000226 P microtubule cytoskeleton organization
GO:0001525 P angiogenesis
GO:0001568 P blood vessel development
GO:0001570 P vasculogenesis
GO:0001725 C stress fiber
GO:0001764 P neuron migration
GO:0001890 P placenta development
GO:0001932 P regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0003007 P heart morphogenesis
GO:0003779 F actin binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0004871 F obsolete signal transducer activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0007172 P signal complex assembly
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007229 P integrin-mediated signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0008284 P positive regulation of cell population proliferation
GO:0008360 P regulation of cell shape
GO:0008432 F JUN kinase binding
GO:0009790 P embryo development
GO:0010594 P regulation of endothelial cell migration
GO:0010632 P regulation of epithelial cell migration
GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016324 C apical plasma membrane
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019901 F protein kinase binding
GO:0021955 P central nervous system neuron axonogenesis
GO:0022408 P negative regulation of cell-cell adhesion
GO:0030010 P establishment of cell polarity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030198 P extracellular matrix organization
GO:0030335 P positive regulation of cell migration
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0033628 P regulation of cell adhesion mediated by integrin
GO:0038007 P netrin-activated signaling pathway
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0038096 P Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0040023 P nuclear migration
GO:0042127 P regulation of cell population proliferation
GO:0042169 F SH2 domain binding
GO:0043066 P negative regulation of apoptotic process
GO:0043087 P regulation of GTPase activity
GO:0043542 P endothelial cell migration
GO:0043547 P positive regulation of GTPase activity
GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity
GO:0045087 P innate immune response
GO:0045667 P regulation of osteoblast differentiation
GO:0045860 P positive regulation of protein kinase activity
GO:0046621 P negative regulation of organ growth
GO:0046777 P protein autophosphorylation
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048013 P ephrin receptor signaling pathway
GO:0048870 P cell motility
GO:0050771 P negative regulation of axonogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051893 P regulation of focal adhesion assembly
GO:0051897 P positive regulation of protein kinase B signaling
GO:0051964 P negative regulation of synapse assembly
GO:0060396 P growth hormone receptor signaling pathway
GO:0071560 P cellular response to transforming growth factor beta stimulus
GO:1900024 P regulation of substrate adhesion-dependent cell spreading
GO:2000060 P positive regulation of ubiquitin-dependent protein catabolic process
GO:2000811 P negative regulation of anoikis
FPKM:2.65 TPM:2.91
6109 A_BomoFB_comp126723_c0_seq1
997bp
FPKM:2.33 TPM:2.56
6110 A_BomoFB_comp1267_c0_seq1
297bp
FPKM:0.94 TPM:1.03
6111 A_BomoFB_comp126848_c0_seq1
216bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_xuthus]
FPKM:0.00 TPM:0.00
6112 A_BomoFB_comp126910_c0_seq1
335bp
FPKM:0.71 TPM:0.78
6113 A_BomoFB_comp126910_c0_seq2
259bp
FPKM:0.00 TPM:0.00
6114 A_BomoFB_comp126947_c0_seq1
1184bp
 PREDICTED:_uncharacterized_protein_LOC101745004_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.77 TPM:3.03
6115 A_BomoFB_comp126958_c0_seq1
669bp
 PREDICTED:_sorting_nexin-27_[Amyelois_transitella]
GO:0001772 C immunological synapse
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0008289 F lipid binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0030904 C retromer complex
GO:0031901 C early endosome membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0035091 F phosphatidylinositol binding
GO:0071203 C WASH complex
GO:1990126 P endocytic recycling
FPKM:2.12 TPM:2.33
6116 A_BomoFB_comp12696_c0_seq1
1092bp
 PREDICTED:_S-formylglutathione_hydrolase_isoform_X1_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0016023 C cytoplasmic vesicle
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0018738 F S-formylglutathione hydrolase activity
GO:0031410 C cytoplasmic vesicle
GO:0046294 P formaldehyde catabolic process
GO:0052689 F carboxylic ester hydrolase activity
GO:0070062 C extracellular exosome
FPKM:120.35 TPM:131.87
6117 A_BomoFB_comp1269_c0_seq1
454bp
FPKM:1.00 TPM:1.10
6118 A_BomoFB_comp127021_c0_seq1
582bp
FPKM:2.18 TPM:2.39
6119 A_BomoFB_comp127034_c0_seq1
2003bp
 PREDICTED:_ikaros_family_zinc_finger_protein_isoform_X2_[Papilio_xuthus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003712 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:2.21 TPM:2.42
6120 A_BomoFB_comp127043_c0_seq1
1113bp
 PREDICTED:_uncharacterized_protein_LOC106100444_isoform_X2_[Papilio_polytes]
FPKM:2.39 TPM:2.62
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