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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6061 A_BomoFB_comp124565_c0_seq1
1459bp
 PREDICTED:_twinkle_protein,_mitochondrial_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0002020 F protease binding
GO:0003678 F DNA helicase activity
GO:0003697 F single-stranded DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006264 P mitochondrial DNA replication
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006390 P mitochondrial transcription
GO:0016787 F hydrolase activity
GO:0034214 P protein hexamerization
GO:0042645 C mitochondrial nucleoid
GO:0043139 F 5'-3' DNA helicase activity
GO:0051260 P protein homooligomerization
GO:0071333 P cellular response to glucose stimulus
FPKM:2.21 TPM:2.42
6062 A_BomoFB_comp12457_c0_seq1
3196bp
 PREDICTED:_putative_methyltransferase_NSUN6_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
FPKM:53.94 TPM:59.10
6063 A_BomoFB_comp12469_c0_seq1
871bp
 putative_phosphatidylethanolamine-binding_protein_isoform_1_[Operophtera_brumata]
GO:0003743 F translation initiation factor activity
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
FPKM:124.76 TPM:136.70
6064 A_BomoFB_comp1246_c0_seq1
464bp
 PREDICTED:_zinc_finger_protein_585A-like_isoform_X7_[Papilio_polytes]
FPKM:1.35 TPM:1.48
6065 A_BomoFB_comp124759_c0_seq1
637bp
 hypothetical_protein_KGM_11778_[Danaus_plexippus]
FPKM:4.30 TPM:4.72
6066 A_BomoFB_comp124765_c0_seq1
256bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:2.84 TPM:3.11
6067 A_BomoFB_comp124859_c0_seq1
415bp
FPKM:3.27 TPM:3.59
6068 A_BomoFB_comp12486_c0_seq1
484bp
 mitochondrial_ATP_synthase_coupling_factor_6_[Bombyx_mori]
GO:0000276 C mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005756 C mitochondrial proton-transporting ATP synthase, central stalk
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046331 P lateral inhibition
FPKM:198.74 TPM:217.77
6069 A_BomoFB_comp124917_c0_seq1
555bp
 PREDICTED:_RNA_pseudouridylate_synthase_domain-containing_protein_2-like_isoform_X2_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
GO:0044822 F RNA binding
FPKM:2.92 TPM:3.20
6070 A_BomoFB_comp12494_c0_seq1
716bp
 PREDICTED:_gamma-glutamylcyclotransferase-like_[Bombyx_mori]
GO:0001836 P release of cytochrome c from mitochondria
GO:0003839 F gamma-glutamylcyclotransferase activity
GO:0005829 C cytosol
GO:0006750 P glutathione biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0042803 F protein homodimerization activity
FPKM:179.17 TPM:196.32
6071 A_BomoFB_comp124975_c0_seq1
458bp
 PREDICTED:_integrator_complex_subunit_7_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006974 P cellular response to DNA damage stimulus
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0071479 P cellular response to ionizing radiation
FPKM:4.15 TPM:4.54
6072 A_BomoFB_comp124_c0_seq1
222bp
 PREDICTED:_TBC1_domain_family_member_16_[Amyelois_transitella]
GO:0001919 P regulation of receptor recycling
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006886 P intracellular protein transport
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0090630 P activation of GTPase activity
GO:1902017 P regulation of cilium assembly
FPKM:2.32 TPM:2.55
6073 A_BomoFB_comp124_c1_seq1
263bp
 TBC1_domain_family_member_16_[Biston_betularia]
GO:0001919 P regulation of receptor recycling
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006886 P intracellular protein transport
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0090630 P activation of GTPase activity
GO:1902017 P regulation of cilium assembly
FPKM:1.31 TPM:1.43
6074 A_BomoFB_comp12501_c0_seq1
1388bp
 NADP-dependent_oxidoreductase_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0006693 P prostaglandin metabolic process
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0032440 F 2-alkenal reductase [NAD(P)+] activity
GO:0036132 F 13-prostaglandin reductase activity
GO:0047522 F 15-oxoprostaglandin 13-oxidase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:131.07 TPM:143.61
6075 A_BomoFB_comp125068_c0_seq1
1100bp
 PREDICTED:_coiled-coil_and_C2_domain-containing_protein_1-like_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000281 P mitotic cytokinesis
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006886 P intracellular protein transport
GO:0007219 P Notch signaling pathway
GO:0007423 P sensory organ development
GO:0007472 P wing disc morphogenesis
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008593 P regulation of Notch signaling pathway
GO:0016197 P endosomal transport
GO:0016324 C apical plasma membrane
GO:0030100 P regulation of endocytosis
GO:0036257 P multivesicular body organization
GO:0045035 P sensory organ precursor cell division
GO:0045732 P positive regulation of protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048132 P female germ-line stem cell asymmetric division
GO:0048749 P compound eye development
FPKM:2.31 TPM:2.53
6076 A_BomoFB_comp125092_c0_seq1
241bp
FPKM:0.00 TPM:0.00
6077 A_BomoFB_comp125106_c0_seq1
872bp
 PREDICTED:_transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000125 C SAGA complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1904837 P beta-catenin-TCF complex assembly
FPKM:3.07 TPM:3.37
6078 A_BomoFB_comp12510_c0_seq1
939bp
 PREDICTED:_repressor_splicing_factor_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
FPKM:109.52 TPM:120.00
6079 A_BomoFB_comp1252_c0_seq1
278bp
 trehalase_precursor_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004555 F alpha,alpha-trehalase activity
GO:0005886 C plasma membrane
GO:0005991 P trehalose metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016323 C basolateral plasma membrane
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:1.12 TPM:1.22
6080 A_BomoFB_comp125323_c0_seq1
493bp
 hypothetical_protein_RR48_00058_[Papilio_machaon]
FPKM:2.45 TPM:2.69
6081 A_BomoFB_comp125381_c0_seq1
769bp
 PREDICTED:_uncharacterized_protein_LOC101745243_[Bombyx_mori]
FPKM:2.78 TPM:3.05
6082 A_BomoFB_comp1253_c0_seq1
229bp
 PREDICTED:_uncharacterized_protein_LOC105388498_[Plutella_xylostella]
FPKM:3.10 TPM:3.39
6083 A_BomoFB_comp125448_c0_seq1
456bp
 heat_shock_70kDa_protein_1/8_[Clonorchis_sinensis]
FPKM:2.98 TPM:3.27
6084 A_BomoFB_comp125491_c0_seq1
392bp
FPKM:0.26 TPM:0.28
6085 A_BomoFB_comp125495_c0_seq1
1168bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:2.85 TPM:3.12
6086 A_BomoFB_comp1255_c0_seq1
570bp
FPKM:0.98 TPM:1.08
6087 A_BomoFB_comp125687_c0_seq1
439bp
 PREDICTED:_GRIP_and_coiled-coil_domain-containing_protein_2-like_[Bombyx_mori]
FPKM:3.60 TPM:3.95
6088 A_BomoFB_comp125710_c0_seq1
404bp
FPKM:3.68 TPM:4.03
6089 A_BomoFB_comp125711_c0_seq1
512bp
 hypothetical_protein_[Xenorhabdus_nematophila]
FPKM:3.14 TPM:3.44
6090 A_BomoFB_comp125742_c0_seq1
398bp
FPKM:0.25 TPM:0.28
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