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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
571 A_BomoFB_comp10121_c0_seq1
4816bp
 PREDICTED:_uncharacterized_protein_LOC101742172_isoform_X3_[Bombyx_mori]
FPKM:0.90 TPM:0.99
572 A_BomoFB_comp10121_c0_seq2
5136bp
 PREDICTED:_uncharacterized_protein_LOC101742172_isoform_X3_[Bombyx_mori]
FPKM:1.33 TPM:1.45
573 A_BomoFB_comp10121_c0_seq3
4980bp
 PREDICTED:_uncharacterized_protein_LOC101742172_isoform_X4_[Bombyx_mori]
FPKM:1.56 TPM:1.71
574 A_BomoFB_comp10121_c0_seq4
267bp
FPKM:1.45 TPM:1.58
575 A_BomoFB_comp10121_c0_seq5
5300bp
 PREDICTED:_uncharacterized_protein_LOC101742172_isoform_X1_[Bombyx_mori]
FPKM:1.96 TPM:2.15
576 A_BomoFB_comp10122_c0_seq1
1050bp
FPKM:1.88 TPM:2.06
577 A_BomoFB_comp10122_c0_seq2
2159bp
 PREDICTED:_26S_protease_regulatory_subunit_7_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000502 C proteasome complex
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0022624 C proteasome accessory complex
GO:0030163 P protein catabolic process
FPKM:31.54 TPM:34.56
578 A_BomoFB_comp10122_c1_seq1
319bp
 HAD_ATPase,_P-type,_family_IC_[Spizellomyces_punctatus_DAOM_BR117]
FPKM:0.40 TPM:0.43
579 A_BomoFB_comp101231_c0_seq1
1458bp
 PREDICTED:_uncharacterized_protein_LOC106118039_[Papilio_xuthus]
FPKM:2.85 TPM:3.13
580 A_BomoFB_comp10123_c0_seq1
6941bp
 clathrin_heavy_chain_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0005938 C cell cortex
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007291 P sperm individualization
GO:0007594 P puparial adhesion
GO:0008021 C synaptic vesicle
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0016020 C membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016183 P synaptic vesicle coating
GO:0016192 P vesicle-mediated transport
GO:0030125 C clathrin vesicle coat
GO:0030129 C clathrin coat of synaptic vesicle
GO:0030130 C clathrin coat of trans-Golgi network vesicle
GO:0030132 C clathrin coat of coated pit
GO:0030135 C coated vesicle
GO:0030136 C clathrin-coated vesicle
GO:0030141 C secretory granule
GO:0030198 P extracellular matrix organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032051 F clathrin light chain binding
GO:0033227 P dsRNA transport
GO:0033363 P secretory granule organization
GO:0035002 P liquid clearance, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0040008 P regulation of growth
GO:0045451 P pole plasm oskar mRNA localization
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048471 C perinuclear region of cytoplasm
GO:0048749 P compound eye development
GO:0071439 C clathrin complex
FPKM:26.64 TPM:29.19
581 A_BomoFB_comp10124_c0_seq1
1621bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.01 TPM:0.01
582 A_BomoFB_comp10124_c0_seq10
1638bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.00 TPM:0.00
583 A_BomoFB_comp10124_c0_seq11
1714bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.00 TPM:0.00
584 A_BomoFB_comp10124_c0_seq12
2064bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:1.17 TPM:1.28
585 A_BomoFB_comp10124_c0_seq13
1384bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:1.00 TPM:1.09
586 A_BomoFB_comp10124_c0_seq14
1545bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.07 TPM:0.08
587 A_BomoFB_comp10124_c0_seq15
1566bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.45 TPM:0.49
588 A_BomoFB_comp10124_c0_seq16
2060bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:0.38 TPM:0.41
589 A_BomoFB_comp10124_c0_seq17
1018bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.97 TPM:1.06
590 A_BomoFB_comp10124_c0_seq18
2136bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:0.45 TPM:0.49
591 A_BomoFB_comp10124_c0_seq2
2039bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:0.09 TPM:0.10
592 A_BomoFB_comp10124_c0_seq3
2115bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:0.42 TPM:0.46
593 A_BomoFB_comp10124_c0_seq4
1967bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:0.21 TPM:0.23
594 A_BomoFB_comp10124_c0_seq5
1988bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:1.02 TPM:1.12
595 A_BomoFB_comp10124_c0_seq6
1693bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.00 TPM:0.00
596 A_BomoFB_comp10124_c0_seq7
2043bp
 PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
FPKM:1.19 TPM:1.30
597 A_BomoFB_comp10124_c0_seq8
1617bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.00 TPM:0.00
598 A_BomoFB_comp10124_c0_seq9
1642bp
 PREDICTED:_WD_repeat-containing_protein_24_[Papilio_polytes]
FPKM:0.00 TPM:0.00
599 A_BomoFB_comp10125_c0_seq1
3097bp
 alanine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
FPKM:20.73 TPM:22.72
600 A_BomoFB_comp101262_c0_seq1
1134bp
 PREDICTED:_spermatogenesis-associated_protein_6_isoform_X1_[Bombyx_mori]
FPKM:3.14 TPM:3.44
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