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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
601 A_BomoFB_comp10126_c0_seq1
738bp
 PREDICTED:_E3_ubiquitin-protein_ligase_UBR5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0033160 P obsolete positive regulation of protein import into nucleus, translocation
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0035413 P positive regulation of canonical Wnt signaling pathway
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0050847 P progesterone receptor signaling pathway
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
FPKM:0.00 TPM:0.00
602 A_BomoFB_comp10126_c0_seq2
3304bp
 PREDICTED:_E3_ubiquitin-protein_ligase_UBR5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007112 P male meiosis cytokinesis
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0007289 P spermatid nucleus differentiation
GO:0007444 P imaginal disc development
GO:0007446 P imaginal disc growth
GO:0007455 P eye-antennal disc morphogenesis
GO:0008270 F zinc ion binding
GO:0008585 P female gonad development
GO:0016874 F ligase activity
GO:0030162 P regulation of proteolysis
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0042127 P regulation of cell population proliferation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043130 F ubiquitin binding
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
FPKM:1.06 TPM:1.16
603 A_BomoFB_comp10126_c0_seq3
4835bp
 PREDICTED:_E3_ubiquitin-protein_ligase_UBR5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007112 P male meiosis cytokinesis
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0007289 P spermatid nucleus differentiation
GO:0007444 P imaginal disc development
GO:0007446 P imaginal disc growth
GO:0007455 P eye-antennal disc morphogenesis
GO:0008270 F zinc ion binding
GO:0008585 P female gonad development
GO:0016874 F ligase activity
GO:0030162 P regulation of proteolysis
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0042127 P regulation of cell population proliferation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043130 F ubiquitin binding
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
FPKM:0.00 TPM:0.00
604 A_BomoFB_comp10126_c0_seq4
7401bp
 PREDICTED:_E3_ubiquitin-protein_ligase_UBR5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007112 P male meiosis cytokinesis
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0007289 P spermatid nucleus differentiation
GO:0007444 P imaginal disc development
GO:0007446 P imaginal disc growth
GO:0007455 P eye-antennal disc morphogenesis
GO:0008270 F zinc ion binding
GO:0008585 P female gonad development
GO:0016874 F ligase activity
GO:0030162 P regulation of proteolysis
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0042127 P regulation of cell population proliferation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043130 F ubiquitin binding
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
FPKM:16.08 TPM:17.62
605 A_BomoFB_comp10127_c0_seq1
341bp
 PREDICTED:_uncharacterized_protein_LOC105842356_[Bombyx_mori]
FPKM:2.12 TPM:2.33
606 A_BomoFB_comp10127_c0_seq2
363bp
 PREDICTED:_uncharacterized_protein_LOC105842356_[Bombyx_mori]
FPKM:3.54 TPM:3.88
607 A_BomoFB_comp10127_c0_seq3
1022bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.59 TPM:2.84
608 A_BomoFB_comp101286_c0_seq1
301bp
 PREDICTED:_uncharacterized_protein_LOC101741863_[Bombyx_mori]
FPKM:7.74 TPM:8.48
609 A_BomoFB_comp10128_c0_seq1
4192bp
 PREDICTED:_protein_zer-1_homolog_[Amyelois_transitella]
GO:0004842 F ubiquitin-protein transferase activity
GO:0016567 P protein ubiquitination
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0051438 P regulation of ubiquitin-protein transferase activity
FPKM:13.77 TPM:15.09
610 A_BomoFB_comp101298_c0_seq1
949bp
 PREDICTED:_gamma-taxilin_[Bombyx_mori]
FPKM:1.84 TPM:2.02
611 A_BomoFB_comp10129_c0_seq1
962bp
 PREDICTED:_cell_division_cycle_5-like_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071987 F WD40-repeat domain binding
GO:0072422 P DNA damage checkpoint signaling
FPKM:9.20 TPM:10.08
612 A_BomoFB_comp10130_c0_seq1
1422bp
 Uncharacterized_protein_OBRU01_15802_[Operophtera_brumata]
FPKM:18.58 TPM:20.36
613 A_BomoFB_comp101310_c0_seq1
1486bp
 Uncharacterized_protein_OBRU01_06377_[Operophtera_brumata]
FPKM:2.79 TPM:3.06
614 A_BomoFB_comp10131_c0_seq1
4518bp
 PREDICTED:_uncharacterized_protein_LOC101745326_isoform_X3_[Bombyx_mori]
FPKM:6.37 TPM:6.98
615 A_BomoFB_comp10131_c0_seq2
1437bp
 PREDICTED:_uncharacterized_protein_LOC101745326_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0010369 C chromocenter
FPKM:4.98 TPM:5.46
616 A_BomoFB_comp10131_c0_seq3
3794bp
 PREDICTED:_uncharacterized_protein_LOC101745326_isoform_X2_[Bombyx_mori]
FPKM:0.44 TPM:0.48
617 A_BomoFB_comp101320_c0_seq1
657bp
FPKM:2.63 TPM:2.89
618 A_BomoFB_comp101325_c0_seq1
1407bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_kurz_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
FPKM:3.59 TPM:3.94
619 A_BomoFB_comp10132_c0_seq1
307bp
FPKM:0.00 TPM:0.00
620 A_BomoFB_comp10132_c0_seq2
350bp
FPKM:4.86 TPM:5.33
621 A_BomoFB_comp10133_c0_seq1
2840bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744503_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
FPKM:0.01 TPM:0.01
622 A_BomoFB_comp10133_c0_seq2
4029bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744503_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
FPKM:6.90 TPM:7.56
623 A_BomoFB_comp10134_c0_seq1
2591bp
 PREDICTED:_toll-interacting_protein-like_[Bombyx_mori]
GO:0002376 P immune system process
GO:0004871 F obsolete signal transducer activity
GO:0005150 F interleukin-1, type I receptor binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006914 P autophagy
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0007267 P cell-cell signaling
GO:0016310 P phosphorylation
GO:0016604 C nuclear body
GO:0019900 F kinase binding
GO:0030855 P epithelial cell differentiation
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032183 F SUMO binding
GO:0033235 P positive regulation of protein sumoylation
GO:0035325 F Toll-like receptor binding
GO:0035556 P intracellular signal transduction
GO:0036010 P protein localization to endosome
GO:0045087 P innate immune response
GO:0045092 C interleukin-18 receptor complex
GO:0045321 P leukocyte activation
GO:0045323 C interleukin-1 receptor complex
GO:0048471 C perinuclear region of cytoplasm
GO:0070062 C extracellular exosome
FPKM:11.16 TPM:12.23
624 A_BomoFB_comp10135_c0_seq1
2055bp
 RNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
FPKM:11.18 TPM:12.25
625 A_BomoFB_comp10135_c0_seq2
787bp
 PREDICTED:_RNA-binding_protein_1-like_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
FPKM:28.35 TPM:31.06
626 A_BomoFB_comp10135_c0_seq3
1677bp
 RNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
FPKM:5.09 TPM:5.58
627 A_BomoFB_comp10136_c0_seq1
573bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_tau_variant_isoform_X2_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0098789 P pre-mRNA cleavage required for polyadenylation
FPKM:5.78 TPM:6.34
628 A_BomoFB_comp10136_c0_seq2
1315bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_tau_variant_isoform_X2_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
GO:0071920 C cleavage body
GO:0098789 P pre-mRNA cleavage required for polyadenylation
FPKM:9.61 TPM:10.53
629 A_BomoFB_comp10137_c0_seq1
2568bp
 PREDICTED:_uncharacterized_protein_LOC105386827_[Plutella_xylostella]
FPKM:3.21 TPM:3.52
630 A_BomoFB_comp10138_c0_seq1
838bp
 unknown_[Picea_sitchensis]
FPKM:88.94 TPM:97.45
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