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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4171 A_BomoFB_comp10554_c0_seq29
4216bp
 PREDICTED:_nitrogen_permease_regulator_3-like_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0007293 P germarium-derived egg chamber formation
GO:0032007 P negative regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0035859 C Seh1-associated complex
GO:0038202 P TORC1 signaling
GO:0044754 C autolysosome
GO:0045792 P negative regulation of cell size
GO:0048477 P oogenesis
FPKM:0.46 TPM:0.50
4172 A_BomoFB_comp10554_c0_seq3
794bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4173 A_BomoFB_comp10554_c0_seq30
317bp
FPKM:1.61 TPM:1.76
4174 A_BomoFB_comp10554_c0_seq31
1010bp
 hypothetical_protein_[Zymomonas_mobilis]
FPKM:3.09 TPM:3.39
4175 A_BomoFB_comp10554_c0_seq32
997bp
 diguanylate_cyclase_[Zymomonas_mobilis]
FPKM:1.20 TPM:1.31
4176 A_BomoFB_comp10554_c0_seq33
500bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.49 TPM:1.63
4177 A_BomoFB_comp10554_c0_seq34
4510bp
 PREDICTED:_nitrogen_permease_regulator_3-like_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0007293 P germarium-derived egg chamber formation
GO:0032007 P negative regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0035859 C Seh1-associated complex
GO:0038202 P TORC1 signaling
GO:0044754 C autolysosome
GO:0045792 P negative regulation of cell size
GO:0048477 P oogenesis
FPKM:0.26 TPM:0.29
4178 A_BomoFB_comp10554_c0_seq35
422bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4179 A_BomoFB_comp10554_c0_seq36
1475bp
FPKM:2.35 TPM:2.58
4180 A_BomoFB_comp10554_c0_seq37
2277bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.61 TPM:0.67
4181 A_BomoFB_comp10554_c0_seq38
4320bp
 PREDICTED:_nitrogen_permease_regulator_3-like_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0007293 P germarium-derived egg chamber formation
GO:0032007 P negative regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0035859 C Seh1-associated complex
GO:0038202 P TORC1 signaling
GO:0044754 C autolysosome
GO:0045792 P negative regulation of cell size
GO:0048477 P oogenesis
FPKM:1.99 TPM:2.18
4182 A_BomoFB_comp10554_c0_seq39
1067bp
 PREDICTED:_uncharacterized_protein_LOC106677622_[Halyomorpha_halys]
FPKM:0.00 TPM:0.00
4183 A_BomoFB_comp10554_c0_seq4
3905bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.20 TPM:0.22
4184 A_BomoFB_comp10554_c0_seq40
1052bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4185 A_BomoFB_comp10554_c0_seq41
4489bp
 PREDICTED:_nitrogen_permease_regulator_3-like_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0007293 P germarium-derived egg chamber formation
GO:0032007 P negative regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0035859 C Seh1-associated complex
GO:0038202 P TORC1 signaling
GO:0044754 C autolysosome
GO:0045792 P negative regulation of cell size
GO:0048477 P oogenesis
FPKM:1.09 TPM:1.19
4186 A_BomoFB_comp10554_c0_seq5
3009bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4187 A_BomoFB_comp10554_c0_seq6
604bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4188 A_BomoFB_comp10554_c0_seq7
3072bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:9.95 TPM:10.90
4189 A_BomoFB_comp10554_c0_seq8
1073bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4190 A_BomoFB_comp10554_c0_seq9
2703bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
4191 A_BomoFB_comp10555_c0_seq1
445bp
 hypothetical_protein_KGM_02137_[Danaus_plexippus]
FPKM:3.94 TPM:4.31
4192 A_BomoFB_comp10555_c1_seq1
2137bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.00 TPM:0.00
4193 A_BomoFB_comp10555_c1_seq2
3328bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:12.37 TPM:13.56
4194 A_BomoFB_comp10555_c1_seq3
2141bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:10.70 TPM:11.73
4195 A_BomoFB_comp10555_c1_seq4
3332bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.35 TPM:3.67
4196 A_BomoFB_comp10555_c1_seq5
2770bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:4.20 TPM:4.60
4197 A_BomoFB_comp10555_c1_seq6
2774bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.59 TPM:0.65
4198 A_BomoFB_comp10556_c0_seq1
1397bp
 mariner_transposase_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:26.30 TPM:28.82
4199 A_BomoFB_comp10556_c0_seq2
869bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_SETMAR-like_[Pyrus_x_bretschneideri]
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.31 TPM:1.44
4200 A_BomoFB_comp1055708_c0_seq1
216bp
 Hect_E3_ubiquitin_ligase,_partial_[Operophtera_brumata]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005743 C mitochondrial inner membrane
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032183 F SUMO binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
FPKM:2.59 TPM:2.84
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