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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1891 A_BomoFB_comp10396_c0_seq4
765bp
FPKM:2.56 TPM:2.81
1892 A_BomoFB_comp10396_c0_seq5
592bp
FPKM:6.51 TPM:7.13
1893 A_BomoFB_comp10396_c0_seq6
996bp
 PREDICTED:_uncharacterized_protein_LOC105848674_[Hydra_vulgaris]
FPKM:1.45 TPM:1.59
1894 A_BomoFB_comp10396_c0_seq7
703bp
 PREDICTED:_ATP_synthase_subunit_s,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
1895 A_BomoFB_comp10396_c0_seq8
1486bp
 PREDICTED:_ATP_synthase_subunit_s,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
1896 A_BomoFB_comp10396_c0_seq9
1375bp
 PREDICTED:_uncharacterized_protein_LOC105848674_[Hydra_vulgaris]
FPKM:0.62 TPM:0.68
1897 A_BomoFB_comp10397_c0_seq1
5165bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:0.23 TPM:0.25
1898 A_BomoFB_comp10397_c0_seq2
6354bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:1.35 TPM:1.48
1899 A_BomoFB_comp10397_c0_seq3
4192bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:0.20 TPM:0.22
1900 A_BomoFB_comp10397_c0_seq4
5296bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:0.15 TPM:0.16
1901 A_BomoFB_comp10397_c0_seq5
5381bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:2.86 TPM:3.13
1902 A_BomoFB_comp10397_c0_seq6
6200bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:0.42 TPM:0.46
1903 A_BomoFB_comp10397_c0_seq7
6285bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:5.64 TPM:6.18
1904 A_BomoFB_comp10397_c0_seq8
5096bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:1.12 TPM:1.23
1905 A_BomoFB_comp10397_c0_seq9
6269bp
 chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008026 F helicase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
FPKM:0.09 TPM:0.10
1906 A_BomoFB_comp10398_c0_seq1
349bp
FPKM:0.98 TPM:1.07
1907 A_BomoFB_comp10398_c1_seq1
770bp
FPKM:6.47 TPM:7.09
1908 A_BomoFB_comp10398_c1_seq2
3071bp
 PREDICTED:_cytoplasmic_aconitate_hydratase-like_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003994 F aconitate hydratase activity
GO:0005737 C cytoplasm
GO:0006099 P tricarboxylic acid cycle
GO:0006879 P cellular iron ion homeostasis
GO:0008152 P metabolic process
GO:0010040 P response to iron(II) ion
GO:0016829 F lyase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
FPKM:1.56 TPM:1.71
1909 A_BomoFB_comp10398_c1_seq3
3238bp
 PREDICTED:_cytoplasmic_aconitate_hydratase-like_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003994 F aconitate hydratase activity
GO:0005737 C cytoplasm
GO:0006099 P tricarboxylic acid cycle
GO:0006879 P cellular iron ion homeostasis
GO:0008152 P metabolic process
GO:0010040 P response to iron(II) ion
GO:0016829 F lyase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
FPKM:19.98 TPM:21.89
1910 A_BomoFB_comp10398_c2_seq1
761bp
 hypothetical_protein_AN958_09812_[Leucoagaricus_sp._SymC.cos]
FPKM:5.54 TPM:6.07
1911 A_BomoFB_comp10398_c3_seq1
766bp
FPKM:0.00 TPM:0.00
1912 A_BomoFB_comp10398_c3_seq10
416bp
FPKM:11.48 TPM:12.58
1913 A_BomoFB_comp10398_c3_seq11
521bp
FPKM:0.00 TPM:0.00
1914 A_BomoFB_comp10398_c3_seq12
1063bp
 PREDICTED:_phosphatidylinositol-binding_clathrin_assembly_protein_LAP_isoform_X10_[Papilio_machaon]
FPKM:8.41 TPM:9.21
1915 A_BomoFB_comp10398_c3_seq13
432bp
FPKM:0.00 TPM:0.00
1916 A_BomoFB_comp10398_c3_seq14
706bp
FPKM:0.00 TPM:0.00
1917 A_BomoFB_comp10398_c3_seq15
330bp
FPKM:3.31 TPM:3.62
1918 A_BomoFB_comp10398_c3_seq16
301bp
FPKM:3.19 TPM:3.49
1919 A_BomoFB_comp10398_c3_seq17
281bp
FPKM:0.00 TPM:0.00
1920 A_BomoFB_comp10398_c3_seq18
242bp
FPKM:0.00 TPM:0.00
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