SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
181 A_BomoFB_comp100436_c0_seq1
755bp
FPKM:3.70 TPM:4.06
182 A_BomoFB_comp100437_c0_seq1
817bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mitochondrial_Rho_GTPase-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000226 P microtubule cytoskeleton organization
GO:0000287 F magnesium ion binding
GO:0003924 F GTPase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005829 C cytosol
GO:0007005 P mitochondrion organization
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007268 P chemical synaptic transmission
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019725 P cellular homeostasis
GO:0031122 P cytoplasmic microtubule organization
GO:0031307 C integral component of mitochondrial outer membrane
GO:0034643 P establishment of mitochondrion localization, microtubule-mediated
GO:0046872 F metal ion binding
GO:0047497 P mitochondrion transport along microtubule
GO:0048489 P synaptic vesicle transport
GO:0051646 P mitochondrion localization
GO:0097345 P mitochondrial outer membrane permeabilization
FPKM:2.48 TPM:2.72
183 A_BomoFB_comp10043_c0_seq1
915bp
 PREDICTED:_cullin-4A_[Papilio_polytes]
GO:0001701 P in utero embryonic development
GO:0005515 F protein binding
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008284 P positive regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0030097 P hemopoiesis
GO:0030853 P negative regulation of granulocyte differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035019 P somatic stem cell population maintenance
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0051246 P regulation of protein metabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:2000001 P regulation of DNA damage checkpoint
GO:2000819 P regulation of nucleotide-excision repair
FPKM:10.16 TPM:11.13
184 A_BomoFB_comp10043_c1_seq1
458bp
 PREDICTED:_cullin-4A_[Papilio_xuthus]
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0000717 P nucleotide-excision repair, DNA duplex unwinding
GO:0003684 F damaged DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035518 P histone H2A monoubiquitination
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070911 P global genome nucleotide-excision repair
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
FPKM:0.00 TPM:0.00
185 A_BomoFB_comp10043_c1_seq2
2162bp
 PREDICTED:_cullin-4A_[Papilio_xuthus]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
FPKM:11.77 TPM:12.90
186 A_BomoFB_comp10044_c0_seq1
2285bp
 cyclin_dependent_kinase_8_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051726 P regulation of cell cycle
FPKM:4.68 TPM:5.12
187 A_BomoFB_comp10044_c0_seq2
969bp
 PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
FPKM:1.08 TPM:1.18
188 A_BomoFB_comp10044_c0_seq3
412bp
 PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
FPKM:2.35 TPM:2.58
189 A_BomoFB_comp10044_c0_seq4
2354bp
 PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
FPKM:3.76 TPM:4.12
190 A_BomoFB_comp10044_c1_seq1
690bp
 PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0031965 C nuclear membrane
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
FPKM:2.89 TPM:3.17
191 A_BomoFB_comp10045_c0_seq1
2221bp
 PREDICTED:_YTH_domain-containing_family_protein_1_isoform_X3_[Papilio_machaon]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990247 F N6-methyladenosine-containing RNA binding
FPKM:0.46 TPM:0.50
192 A_BomoFB_comp10045_c0_seq2
2629bp
 PREDICTED:_YTH_domain-containing_family_protein_1_isoform_X3_[Papilio_machaon]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990247 F N6-methyladenosine-containing RNA binding
FPKM:8.76 TPM:9.60
193 A_BomoFB_comp10045_c0_seq3
2500bp
 PREDICTED:_YTH_domain-containing_family_protein_1_isoform_X3_[Papilio_machaon]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990247 F N6-methyladenosine-containing RNA binding
FPKM:1.43 TPM:1.56
194 A_BomoFB_comp100467_c0_seq1
1740bp
 PREDICTED:_uncharacterized_protein_LOC101744402_[Bombyx_mori]
GO:0016567 P protein ubiquitination
FPKM:3.14 TPM:3.44
195 A_BomoFB_comp10046_c0_seq1
1530bp
 PREDICTED:_claspin_homolog,_partial_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0043874 F acireductone synthase activity
GO:0046872 F metal ion binding
FPKM:6.64 TPM:7.28
196 A_BomoFB_comp10046_c0_seq2
4689bp
 PREDICTED:_claspin_homolog,_partial_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0043874 F acireductone synthase activity
GO:0046872 F metal ion binding
FPKM:10.20 TPM:11.17
197 A_BomoFB_comp100475_c0_seq1
692bp
FPKM:4.37 TPM:4.79
198 A_BomoFB_comp10047_c0_seq1
633bp
 putative_selenoprotein_M_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0048471 C perinuclear region of cytoplasm
FPKM:23.79 TPM:26.06
199 A_BomoFB_comp10047_c0_seq2
595bp
 putative_selenoprotein_M_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0048471 C perinuclear region of cytoplasm
FPKM:23.83 TPM:26.11
200 A_BomoFB_comp100484_c0_seq1
735bp
 PREDICTED:_PIN2/TERF1-interacting_telomerase_inhibitor_1_[Plutella_xylostella]
GO:0000228 C nuclear chromosome
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005819 C spindle
GO:0007004 P telomere maintenance via telomerase
GO:0007080 P mitotic metaphase plate congression
GO:0010521 F telomerase inhibitor activity
GO:0031397 P negative regulation of protein ubiquitination
GO:0031647 P regulation of protein stability
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0043231 C intracellular membrane-bounded organelle
GO:0051974 P negative regulation of telomerase activity
GO:0070034 F telomerase RNA binding
GO:0070198 P protein localization to chromosome, telomeric region
GO:1902570 P protein localization to nucleolus
GO:1904744 P positive regulation of telomeric DNA binding
GO:1904751 P positive regulation of protein localization to nucleolus
FPKM:3.93 TPM:4.31
201 A_BomoFB_comp10048_c0_seq1
2431bp
 casein_kinase_2_beta_subunit_[Bombyx_mori]
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0045859 P regulation of protein kinase activity
FPKM:5.44 TPM:5.96
202 A_BomoFB_comp10048_c0_seq2
2426bp
 casein_kinase_2_beta_subunit_[Bombyx_mori]
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0045859 P regulation of protein kinase activity
FPKM:3.23 TPM:3.54
203 A_BomoFB_comp10048_c0_seq3
942bp
 PREDICTED:_casein_kinase_2_beta_subunit_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0031519 C PcG protein complex
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
204 A_BomoFB_comp10048_c0_seq4
947bp
 PREDICTED:_casein_kinase_2_beta_subunit_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0031519 C PcG protein complex
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
FPKM:0.07 TPM:0.07
205 A_BomoFB_comp10048_c0_seq5
2416bp
 PREDICTED:_casein_kinase_2_beta_subunit_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0031519 C PcG protein complex
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
FPKM:2.33 TPM:2.56
206 A_BomoFB_comp10048_c0_seq6
962bp
 PREDICTED:_casein_kinase_2_beta_subunit_isoform_X1_[Bombyx_mori]
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0045859 P regulation of protein kinase activity
FPKM:0.02 TPM:0.02
207 A_BomoFB_comp10048_c0_seq7
957bp
 PREDICTED:_casein_kinase_2_beta_subunit_isoform_X1_[Bombyx_mori]
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0045859 P regulation of protein kinase activity
FPKM:13.43 TPM:14.71
208 A_BomoFB_comp10048_c0_seq8
2411bp
 PREDICTED:_casein_kinase_2_beta_subunit_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0031519 C PcG protein complex
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
209 A_BomoFB_comp10049_c0_seq1
288bp
 putative_plasmid_replication_protein_[Pseudomonas_savastanoi_pv._savastanoi]
FPKM:6.40 TPM:7.01
210 A_BomoFB_comp10049_c0_seq2
323bp
 peptidase_[Sporocytophaga_myxococcoides]
FPKM:1.70 TPM:1.87
previous next from show/35635

- SilkBase 1999-2023 -