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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
151 A_BomoFB_comp10035_c0_seq4
654bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:3.92 TPM:4.30
152 A_BomoFB_comp100362_c0_seq1
3360bp
 PREDICTED:_nuclear_pore_complex_protein_Nup155_[Bombyx_mori]
GO:0000972 P transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006998 P nuclear envelope organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031965 C nuclear membrane
GO:0036228 P protein localization to nuclear inner membrane
GO:0044611 C nuclear pore inner ring
GO:0051028 P mRNA transport
GO:0086014 P atrial cardiac muscle cell action potential
FPKM:3.45 TPM:3.78
153 A_BomoFB_comp100367_c0_seq1
1139bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_protein_FAM76A_[Bombyx_mori]
GO:0004175 F endopeptidase activity
GO:0005634 C nucleus
GO:0016926 P protein desumoylation
GO:0016929 F SUMO-specific protease activity
FPKM:3.69 TPM:4.04
154 A_BomoFB_comp100369_c0_seq1
1391bp
 PREDICTED:_exportin-2_[Papilio_xuthus]
GO:0005049 F nuclear export signal receptor activity
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006606 P protein import into nucleus
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006909 P phagocytosis
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
GO:0022008 P neurogenesis
GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
FPKM:3.87 TPM:4.24
155 A_BomoFB_comp10036_c0_seq1
214bp
 hypothetical_protein_B456_006G011500_[Gossypium_raimondii]
FPKM:0.00 TPM:0.00
156 A_BomoFB_comp10036_c0_seq2
508bp
 Eyes_absent-like_4_[Papilio_machaon]
FPKM:4.01 TPM:4.39
157 A_BomoFB_comp10036_c0_seq3
732bp
 hypothetical_protein_[Snodgrassella_alvi]
FPKM:2.77 TPM:3.03
158 A_BomoFB_comp10037_c0_seq1
238bp
FPKM:1.80 TPM:1.97
159 A_BomoFB_comp10037_c1_seq1
2576bp
 PREDICTED:_proto-oncogene_c-Fos_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000976 F transcription cis-regulatory region binding
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000982 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006094 P gluconeogenesis
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0010628 P positive regulation of gene expression
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0034198 P cellular response to amino acid starvation
GO:0035914 P skeletal muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
GO:1903984 P positive regulation of TRAIL-activated apoptotic signaling pathway
GO:1990440 P positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
GO:1990622 C CHOP-ATF3 complex
FPKM:10.03 TPM:10.99
160 A_BomoFB_comp10037_c1_seq2
2642bp
 PREDICTED:_proto-oncogene_c-Fos_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000976 F transcription cis-regulatory region binding
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006094 P gluconeogenesis
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008284 P positive regulation of cell population proliferation
GO:0010628 P positive regulation of gene expression
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0034198 P cellular response to amino acid starvation
GO:0035914 P skeletal muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
GO:1903984 P positive regulation of TRAIL-activated apoptotic signaling pathway
GO:1990440 P positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
GO:1990622 C CHOP-ATF3 complex
FPKM:1.77 TPM:1.94
161 A_BomoFB_comp100387_c0_seq1
497bp
FPKM:3.80 TPM:4.17
162 A_BomoFB_comp10038_c0_seq1
901bp
FPKM:4.99 TPM:5.47
163 A_BomoFB_comp10038_c1_seq1
373bp
FPKM:1.71 TPM:1.88
164 A_BomoFB_comp10038_c2_seq1
3806bp
 PREDICTED:_uncharacterized_protein_LOC101739482_isoform_X3_[Bombyx_mori]
GO:0004112 F cyclic-nucleotide phosphodiesterase activity
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0004115 F 3',5'-cyclic-AMP phosphodiesterase activity
GO:0005622 C intracellular anatomical structure
GO:0006198 P cAMP catabolic process
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0016787 F hydrolase activity
GO:0019933 P cAMP-mediated signaling
GO:0046872 F metal ion binding
FPKM:22.70 TPM:24.88
165 A_BomoFB_comp10038_c2_seq2
3830bp
 PREDICTED:_uncharacterized_protein_LOC101739482_isoform_X3_[Bombyx_mori]
GO:0004112 F cyclic-nucleotide phosphodiesterase activity
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0004115 F 3',5'-cyclic-AMP phosphodiesterase activity
GO:0005622 C intracellular anatomical structure
GO:0006198 P cAMP catabolic process
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0016787 F hydrolase activity
GO:0019933 P cAMP-mediated signaling
GO:0046872 F metal ion binding
FPKM:8.73 TPM:9.57
166 A_BomoFB_comp100396_c0_seq1
731bp
 Uncharacterized_protein_OBRU01_12769_[Operophtera_brumata]
FPKM:3.27 TPM:3.58
167 A_BomoFB_comp10039_c0_seq1
617bp
 act-1,_partial_[Pristionchus_pacificus]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
FPKM:107.60 TPM:117.90
168 A_BomoFB_comp10039_c0_seq2
567bp
 act-1,_partial_[Pristionchus_pacificus]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
FPKM:96.40 TPM:105.63
169 A_BomoFB_comp10040_c0_seq1
849bp
 PREDICTED:_pre-mRNA-splicing_factor_Syf2_[Papilio_xuthus]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0071004 C U2-type prespliceosome
GO:0071006 C U2-type catalytic step 1 spliceosome
GO:0071007 C U2-type catalytic step 2 spliceosome
GO:0071008 C U2-type post-mRNA release spliceosomal complex
FPKM:14.02 TPM:15.36
170 A_BomoFB_comp100417_c0_seq1
1738bp
 PREDICTED:_MAP_kinase-activated_protein_kinase_2_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0004871 F obsolete signal transducer activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007155 P cell adhesion
GO:0007166 P cell surface receptor signaling pathway
GO:0008360 P regulation of cell shape
GO:0009651 P response to salt stress
GO:0009931 F calcium-dependent protein serine/threonine kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0045793 P positive regulation of cell size
GO:0046328 P regulation of JNK cascade
GO:0046777 P protein autophosphorylation
FPKM:3.35 TPM:3.67
171 A_BomoFB_comp10041_c0_seq1
502bp
FPKM:4.07 TPM:4.46
172 A_BomoFB_comp10041_c0_seq2
1862bp
 PREDICTED:_serine/arginine-rich_splicing_factor_4-like_[Amyelois_transitella]
FPKM:8.66 TPM:9.49
173 A_BomoFB_comp10041_c0_seq3
348bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.46 TPM:0.51
174 A_BomoFB_comp10041_c0_seq4
1412bp
FPKM:2.47 TPM:2.71
175 A_BomoFB_comp10042_c0_seq1
734bp
FPKM:5.31 TPM:5.81
176 A_BomoFB_comp10042_c0_seq2
684bp
FPKM:0.19 TPM:0.21
177 A_BomoFB_comp10042_c0_seq3
559bp
 MULTISPECIES:_acyl_carrier_protein_[Chryseobacterium]
FPKM:0.00 TPM:0.00
178 A_BomoFB_comp10042_c0_seq4
794bp
FPKM:5.27 TPM:5.78
179 A_BomoFB_comp100432_c0_seq1
1090bp
FPKM:2.21 TPM:2.43
180 A_BomoFB_comp100435_c0_seq1
325bp
 PREDICTED:_titin-like_isoform_X2_[Bombyx_mori]
FPKM:6.08 TPM:6.67
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