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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
211 A_BomoFB_comp10049_c0_seq3
1203bp
FPKM:2.45 TPM:2.68
212 A_BomoFB_comp10049_c0_seq4
540bp
FPKM:0.00 TPM:0.00
213 A_BomoFB_comp1005030_c0_seq1
457bp
 cadherin-like_membrane_protein_[Bombyx_mori]
FPKM:0.79 TPM:0.87
214 A_BomoFB_comp100507_c0_seq1
955bp
 PREDICTED:_neurogenic_protein_mastermind-like_[Amyelois_transitella]
FPKM:4.01 TPM:4.39
215 A_BomoFB_comp10050_c0_seq1
1331bp
 PREDICTED:_uncharacterized_protein_LOC106138229_[Amyelois_transitella]
FPKM:3.50 TPM:3.83
216 A_BomoFB_comp100517_c0_seq1
594bp
 multidrug_resistance_protein_CDR1_[Verticillium_dahliae_VdLs.17]
FPKM:2.71 TPM:2.97
217 A_BomoFB_comp10051_c0_seq1
2827bp
 PREDICTED:_plastin-2_[Papilio_machaon]
GO:0001725 C stress fiber
GO:0001726 C ruffle
GO:0001891 C phagocytic cup
GO:0002102 C podosome
GO:0002286 P T cell activation involved in immune response
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0009611 P response to wounding
GO:0010737 P protein kinase A signaling
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0022617 P extracellular matrix disassembly
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0031100 P animal organ regeneration
GO:0032432 C actin filament bundle
GO:0032587 C ruffle membrane
GO:0033157 P regulation of intracellular protein transport
GO:0042802 F identical protein binding
GO:0042995 C cell projection
GO:0046872 F metal ion binding
GO:0051015 F actin filament binding
GO:0051017 P actin filament bundle assembly
GO:0051020 F GTPase binding
GO:0070062 C extracellular exosome
GO:0071803 P positive regulation of podosome assembly
FPKM:11.91 TPM:13.05
218 A_BomoFB_comp100529_c0_seq1
1705bp
 PREDICTED:_glycosyltransferase_25_family_member_isoform_X1_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
FPKM:2.57 TPM:2.81
219 A_BomoFB_comp10052_c0_seq1
337bp
 Uncharacterized_protein_OBRU01_03943_[Operophtera_brumata]
FPKM:0.00 TPM:0.00
220 A_BomoFB_comp10052_c0_seq2
914bp
 PREDICTED:_uncharacterized_protein_LOC105385776,_partial_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003693 F P-element binding
GO:0004803 F transposase activity
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
FPKM:1.56 TPM:1.71
221 A_BomoFB_comp100537_c0_seq1
2529bp
 PREDICTED:_uncharacterized_protein_LOC101743046_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
FPKM:3.05 TPM:3.35
222 A_BomoFB_comp10053_c0_seq1
2972bp
 Transposable_element_Tc3_transposase_[Operophtera_brumata]
FPKM:4.63 TPM:5.08
223 A_BomoFB_comp100544_c0_seq1
2672bp
 PREDICTED:_chitinase-3-like_protein_1_[Papilio_xuthus]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005975 P carbohydrate metabolic process
GO:0006032 P chitin catabolic process
GO:0006915 P apoptotic process
GO:0006954 P inflammatory response
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0008061 F chitin binding
GO:0009612 P response to mechanical stimulus
GO:0010800 P positive regulation of peptidyl-threonine phosphorylation
GO:0030246 F carbohydrate binding
GO:0030324 P lung development
GO:0034612 P response to tumor necrosis factor
GO:0045766 P positive regulation of angiogenesis
GO:0048471 C perinuclear region of cytoplasm
GO:0051216 P cartilage development
GO:0051897 P positive regulation of protein kinase B signaling
GO:0070062 C extracellular exosome
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0070555 P response to interleukin-1
GO:0070741 P response to interleukin-6
GO:0071347 P cellular response to interleukin-1
GO:0071356 P cellular response to tumor necrosis factor
GO:0072606 P interleukin-8 production
FPKM:3.66 TPM:4.02
224 A_BomoFB_comp100545_c0_seq1
601bp
 PREDICTED:_eukaryotic_translation_initiation_factor_2D,_partial_[Plutella_xylostella]
GO:0001731 P formation of translation preinitiation complex
GO:0002192 P IRES-dependent translational initiation of linear mRNA
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0022627 C cytosolic small ribosomal subunit
GO:0032790 P ribosome disassembly
FPKM:3.51 TPM:3.84
225 A_BomoFB_comp100549_c0_seq1
302bp
FPKM:0.90 TPM:0.99
226 A_BomoFB_comp10054_c0_seq1
2665bp
 Arginine/serine-rich_protein_PNISR_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
227 A_BomoFB_comp10054_c0_seq2
1744bp
 Arginine/serine-rich_protein_PNISR_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
FPKM:3.65 TPM:4.00
228 A_BomoFB_comp10054_c0_seq3
2479bp
 PREDICTED:_arginine/serine-rich_protein_PNISR-like_[Papilio_polytes]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
FPKM:3.09 TPM:3.39
229 A_BomoFB_comp10054_c0_seq4
1690bp
 Arginine/serine-rich_protein_PNISR_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
FPKM:0.59 TPM:0.64
230 A_BomoFB_comp10054_c0_seq5
2719bp
 Arginine/serine-rich_protein_PNISR_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
231 A_BomoFB_comp10054_c0_seq6
1596bp
 40S_ribosomal_protein_S30_[Papilio_machaon]
FPKM:1.05 TPM:1.15
232 A_BomoFB_comp10054_c0_seq7
1450bp
 PREDICTED:_arginine/serine-rich_protein_PNISR-like_[Papilio_polytes]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
233 A_BomoFB_comp10054_c0_seq8
2425bp
 PREDICTED:_arginine/serine-rich_protein_PNISR-like_[Papilio_polytes]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
FPKM:1.30 TPM:1.42
234 A_BomoFB_comp10054_c0_seq9
1504bp
 PREDICTED:_arginine/serine-rich_protein_PNISR-like_[Papilio_polytes]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
235 A_BomoFB_comp100554_c0_seq1
370bp
 PREDICTED:_serine/threonine-protein_kinase_grp_isoform_X2_[Bombyx_mori]
GO:0000075 P cell cycle checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007275 P multicellular organism development
GO:0007348 P regulation of syncytial blastoderm mitotic cell cycle
GO:0007349 P cellularization
GO:0007444 P imaginal disc development
GO:0009314 P response to radiation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016321 P female meiosis chromosome segregation
GO:0016740 F transferase activity
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0042060 P wound healing
GO:0051225 P spindle assembly
GO:0051299 P centrosome separation
FPKM:5.51 TPM:6.03
236 A_BomoFB_comp100556_c0_seq1
1877bp
 PREDICTED:_protein_pangolin,_isoforms_A/H/I/S_isoform_X1_[Amyelois_transitella]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005875 C microtubule associated complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0007435 P salivary gland morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007500 P mesodermal cell fate determination
GO:0007507 P heart development
GO:0008013 F beta-catenin binding
GO:0009880 P embryonic pattern specification
GO:0010628 P positive regulation of gene expression
GO:0016055 P Wnt signaling pathway
GO:0019900 F kinase binding
GO:0030111 P regulation of Wnt signaling pathway
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045610 P regulation of hemocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060070 P canonical Wnt signaling pathway
GO:0070491 F DNA-binding transcription factor binding
GO:0072091 P regulation of stem cell proliferation
FPKM:2.88 TPM:3.16
237 A_BomoFB_comp10055_c0_seq1
2132bp
 PREDICTED:_T-complex_protein_1_subunit_gamma_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0007052 P mitotic spindle organization
GO:0007430 P terminal branching, open tracheal system
GO:0042623 F ATP hydrolysis activity
GO:0051082 F unfolded protein binding
GO:0060439 P trachea morphogenesis
GO:0090307 P mitotic spindle assembly
FPKM:5.90 TPM:6.46
238 A_BomoFB_comp10055_c0_seq10
547bp
 PREDICTED:_insulin-degrading_enzyme-like_[Plutella_xylostella]
FPKM:0.00 TPM:0.00
239 A_BomoFB_comp10055_c0_seq2
310bp
 PREDICTED:_uncharacterized_protein_LOC105841951_[Bombyx_mori]
FPKM:5.51 TPM:6.04
240 A_BomoFB_comp10055_c0_seq3
390bp
FPKM:1.83 TPM:2.01
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