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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10044_c0_seq4
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
Transcript
Level		FPKM:3.76 TPM:4.12
ORF EntryO_BomoFB11516_3prime_partial:A_BomoFB_comp10044_c0_seq4
Sequence
(Nucleotide)
AGAACATAGAAAATGAGTAAATGGGATTGTCAATGAGACTAGAGACACTGACTATAAAAC
TTGACTTTGGCGATATCAAATAGCCACTGAGCAAGTAATCACTACGTTATAACTAGAGAG
AGAGACAGTGTACCCTATCTGACTATCTGATTCTGTTATTCTGTTAGTAGGAAATAAAAT
CAGTAGGTACCGTACGTGGATAATCGGTATTAAACGTAATAAGCATAAATAATTACACCA
AATATGGCATCAGTTTCCATTACTTCAGTTGATTCTGTAAAATTTCTCGATTTATGTAAA
ATTCTTAAGCGAATGAGCGATACGAAGAAAAAAAGCGGATCGCTGTAATGTGCTACTTCA
TTATTTGCACGATTTGAAATCGAAACTCCCAAAGACAACGGACGGAAAGAACACTACATT
GTTCGCACTTCTGAGGTTACTTTTGCCAAAACTGGAAAGGGAGCGACCAGCGTACAATTT
AAAAGAAAAATCCCTTGGTTCATTGCTGGTGCGAGTTTTGGCACTAAGTAAAAAGTCGCC
GGGTGCAAAGCAGTTACTACATTTTAGATCTGTTAGCAATAGCCAGGAGAGCGACTTTGC
GGGCGTCGTATATTTCATATTGAAATACAAAGTTGGCACAGACGCTGAAGAACTTACTAT
CGGTCAAATTAATGAAGCCCTTGATAAAATAGCTACACATGCAGAAAATAGAAGTGATAT
ATTAGATCAGACATTTAGTTATATTCTCAGAAAATTGACCGCTGAACAACTGAAATGGTT
CCTCAGGATAATACTCAAAGATATGCGGCTAGGTGTAAGCGACAATCACATTTTAAGTTG
TTTCCATCCTGATGCCCCCGAAATCTACAAAATGACGAACAGTCTTAGTAAGGTATGTAA
AGAGCTTGAAGAAGACGAAAGTCGCCCTACGGAGCTAGGGTTACAGCTAAATTACGCTGT
AACTCCGATGTTATCCGAACGTCTAGACGTAACCGACGTGCAGCAATACTTGTCCCCCGA
CAAGACATATCATATAGAGAAAAAGTTTGACGGCGAAAGATTTCAGATGCACATGAAAGA
CGGTGTATTCAAATATTTTTCGAAAAAAGGTCATTCAGAGAGTTTCACAAAGACATACGG
GGAAACCTACAAAGAAGGGTTGCTGACACCGTTTTTAAAAGATAGTTTTGGTAGTGACGT
GAAGAATTTCGTTATAGACGGTGAAATGATGGGCTGGCACAAAGAATTACAGAGTTTCGG
TAGCAAGAGCATGCCTTATAATATCAAAAAAATAACGGAAAATTCGAAAGTCAGGCCGTG
TTTCTGCGCTTTTGATATCCTGTATTATAATGATAAATCTTTGGTGGGACCTCCGGAACA
CGGGGGCCTACCTCTTGACGAGCGCCTACCGTTGCTTGATAATCTATTCAAAGATATCAG
AGGTGTAATACAACATAGCGCCAGACGAGCTGTTCATAAGAGTTCTGACGTACTGGACGC
CCTGAACGAAGCCATGCAGAACGACGAGGAAGGCATCGTAGTGAAGGACACAAAATCATA
TTACATCTCGAGCCAACGCAAAGCCGGCTGGTACAAGATAAAACCAGAGTACACAGAGGG
AGTTTTGGCAGATTTGGACTTAGTGATAATTGGTGCTGACGAAGCGGCGGATAAAACGCA
TGGACGCGCGAACAGTTTCGTGGTTGCTTGTGCGGAATTATCAAGTACCGGTCGTCCACA
ACGCTGGCTATCGGTGAGCCACGTGTCGAACGGTCTAACCCACGAGGAGCGAGCGGGACT
GTGTGCGGAGCTTGAGTTGCACTGGAAGAGGACCGCCGACCATCCCCCACCGGAGCACCT
GGTCTTCAATGAACGCAAACCAGACTTTTGGATCGAACCCGATCATTCGGTTGTGTTACA
GATTCACGCCACGGAATTGGTTCGTACCCCGAAGTTCGGCACGCCGTACACGCTACAGTT
CCAGCGCGTCGAACGCCTGCGTCACGACAAGCCGGTCAACGACGCCATGACTATTGACGA
ATTCAAAAAACTGATAAAGAATCACAGTCCCGTAATAAAGTTGGCTGTTAACGCAATCAG
TGAAGATCAGCTAAACAAAACGTCAGCTAAATCACCCAGAAAACGGCAGAAGAAAGTTCT
TCAAGTTGCCGAACAATTCAGAACTGGAATACAAGATAAAGTGGAAGTGATATCGAACGC
TCTGGCCGGACGGAGAATATGCATTCTGTCAGACGAAGAAGACTGCAGCCGCACTGAGCT
AATCAAAATCGTGGAGTCTCACGGAGGACAAGTGGTTGCTAACTACGACGAGTCGTGCTG
GTGCTGCGTGTCGG
(2354 bp)

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