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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1291 A_BomoFB_comp10303_c0_seq1
420bp
 PREDICTED:_uncharacterized_protein_LOC105841570_[Bombyx_mori]
FPKM:1.14 TPM:1.25
1292 A_BomoFB_comp10303_c0_seq2
224bp
FPKM:2.24 TPM:2.46
1293 A_BomoFB_comp10303_c0_seq3
710bp
FPKM:2.78 TPM:3.05
1294 A_BomoFB_comp10303_c0_seq4
548bp
 PREDICTED:_uncharacterized_protein_LOC105841570_[Bombyx_mori]
FPKM:3.42 TPM:3.75
1295 A_BomoFB_comp103042_c0_seq1
366bp
FPKM:1.18 TPM:1.30
1296 A_BomoFB_comp10304_c0_seq1
1073bp
 ras_small_monomeric_GTPase_Rab6_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007293 P germarium-derived egg chamber formation
GO:0007411 P axon guidance
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030054 C cell junction
GO:0031982 C vesicle
GO:0032482 P Rab protein signal transduction
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0045202 C synapse
GO:0045451 P pole plasm oskar mRNA localization
GO:0045467 P R7 cell development
GO:0050832 P defense response to fungus
GO:0060078 P regulation of postsynaptic membrane potential
FPKM:11.78 TPM:12.90
1297 A_BomoFB_comp10304_c0_seq2
974bp
 PREDICTED:_ras-related_protein_Rab6_isoform_X1_[Papilio_polytes]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007293 P germarium-derived egg chamber formation
GO:0007411 P axon guidance
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030054 C cell junction
GO:0031982 C vesicle
GO:0032482 P Rab protein signal transduction
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0045202 C synapse
GO:0045451 P pole plasm oskar mRNA localization
GO:0045467 P R7 cell development
GO:0050832 P defense response to fungus
GO:0060078 P regulation of postsynaptic membrane potential
FPKM:5.14 TPM:5.64
1298 A_BomoFB_comp10304_c1_seq1
952bp
 PREDICTED:_zinc_finger_protein_583-like_isoform_X1_[Bombyx_mori]
FPKM:1.34 TPM:1.47
1299 A_BomoFB_comp10304_c1_seq2
1300bp
 PREDICTED:_zinc_finger_protein_583-like_isoform_X1_[Bombyx_mori]
FPKM:3.32 TPM:3.63
1300 A_BomoFB_comp10305_c0_seq1
8090bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:7.65 TPM:8.38
1301 A_BomoFB_comp10305_c0_seq2
7693bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:8.22 TPM:9.01
1302 A_BomoFB_comp10305_c0_seq3
8015bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:1.67 TPM:1.83
1303 A_BomoFB_comp10305_c0_seq4
7618bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:1.63 TPM:1.78
1304 A_BomoFB_comp10306_c0_seq1
255bp
FPKM:0.00 TPM:0.00
1305 A_BomoFB_comp10306_c0_seq2
488bp
FPKM:0.00 TPM:0.00
1306 A_BomoFB_comp10306_c0_seq3
1182bp
FPKM:1.74 TPM:1.91
1307 A_BomoFB_comp10306_c0_seq4
1574bp
 PREDICTED:_uncharacterized_protein_LOC103308774_[Acyrthosiphon_pisum]
FPKM:0.00 TPM:0.00
1308 A_BomoFB_comp10306_c0_seq5
448bp
FPKM:4.30 TPM:4.71
1309 A_BomoFB_comp10306_c0_seq6
880bp
 PREDICTED:_uncharacterized_protein_LOC103308774_[Acyrthosiphon_pisum]
FPKM:0.26 TPM:0.29
1310 A_BomoFB_comp10306_c0_seq7
1557bp
 PREDICTED:_uncharacterized_protein_LOC103308774_[Acyrthosiphon_pisum]
FPKM:0.00 TPM:0.00
1311 A_BomoFB_comp10306_c0_seq8
863bp
 PREDICTED:_uncharacterized_protein_LOC103308774_[Acyrthosiphon_pisum]
FPKM:1.97 TPM:2.16
1312 A_BomoFB_comp10306_c0_seq9
937bp
FPKM:0.00 TPM:0.00
1313 A_BomoFB_comp10307_c0_seq1
5458bp
FPKM:0.16 TPM:0.18
1314 A_BomoFB_comp10307_c0_seq10
3694bp
FPKM:0.00 TPM:0.00
1315 A_BomoFB_comp10307_c0_seq11
3379bp
FPKM:0.00 TPM:0.00
1316 A_BomoFB_comp10307_c0_seq12
4651bp
 adenosine_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004001 F adenosine kinase activity
GO:0005524 F ATP binding
GO:0006166 P purine ribonucleoside salvage
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0044209 P AMP salvage
FPKM:0.00 TPM:0.00
1317 A_BomoFB_comp10307_c0_seq13
2783bp
 phosphate_transport_protein_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:110.10 TPM:120.64
1318 A_BomoFB_comp10307_c0_seq14
4809bp
FPKM:5.38 TPM:5.89
1319 A_BomoFB_comp10307_c0_seq15
4651bp
 phosphate_transport_protein_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.29 TPM:3.61
1320 A_BomoFB_comp10307_c0_seq16
3807bp
FPKM:0.00 TPM:0.00
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